BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484681
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03230.1 | Symbols: | Eukaryotic aspartyl protease family p... 1027 0.0
AT1G03220.1 | Symbols: | Eukaryotic aspartyl protease family p... 933 0.0
> AT1G03230.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:790091-791592 FORWARD LENGTH=1502
Length=1502
Score = 1027 bits (556), Expect = 0.0
Identities = 676/734 (92%), Gaps = 7/734 (1%)
Strand=Plus/Plus
Query 1 tcatctctaacaatggcatcttctc-aa--atcatcttctccattcttcttctcttcatc 57
||||||||||||||||| ||||||| || |||||||||||| |||||||||||| ||||
Sbjct 8 TCATCTCTAACAATGGCGTCTTCTCGAATCATCATCTTCTCCGTTCTTCTTCTCTCCATC 67
Query 58 ttctcactctcatcatctGCTAAACCATCTTCCCGTCCCAAAGCTCTCCTTCTCCCAGTA 117
|||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 68 TTCTCACTCTCATCATCTGCCCAACCATCTTTCCGCCCCAAAGCTCTCCTTCTCCCAGTA 127
Query 118 ACAAAAGACCAATCTACCCTCCAATACACAACCATCATCAACCAACGCACACCTCTCGTC 177
|||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 128 ACAAAAGACCCATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTC 187
Query 178 CCCGCTTCCGTCGTCTTCGACCTCAGTGGCCGAGAACTCTGGGTCGACTGTGATAAAGGC 237
|||||||||||||| ||||||||| |||| |||||| |||||||||||||||| |||||
Sbjct 188 CCCGCTTCCGTCGTATTCGACCTCGGTGGTCGAGAATTCTGGGTCGACTGTGACCAAGGC 247
Query 238 TACGTCTCAACCACATACCACTCCCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGC 297
|||||||| ||||| |||| ||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 248 TACGTCTCCACCACTTACCGCTCTCCTCGCTGCAACTCCGCTGTCTGCTCACGCGCCGGC 307
Query 298 TCCATCAGC-TGCGGTACATGCTTCTCACCTCCAAAACCTGGCTGTAGTAACAACACTTG 356
|||||| || ||||| ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 308 TCCATC-GCCTGCGGCACATGCTTCTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTG 366
Query 357 CGGCGCTTTTCCATCTAACTCCGTCACCGGATGGTCAACTTCAGGCGAATTTGCTTTAGA 416
||||||||||||| ||||||| ||||||||||| |||| || |||||||||||||||||
Sbjct 367 CGGCGCTTTTCCAGATAACTCCATCACCGGATGGGCAACCTCGGGCGAATTTGCTTTAGA 426
Query 417 CGTTGTCTCTATTCAGTCAACTAACGGATCCAACCCGGGTCGGTTCGTTAAAATCCCCAA 476
|||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 427 CGTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGGTCGGTTCGTTAAAATCCCCAA 486
Query 477 TATAATATTCAGTTGCGGATCAACCTCTCTTCTTAAAGGACTCGCTAAAGGAACCGTTGG 536
| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 487 TCTAATATTCAGTTGCGGATCAACGTCTCTTCTTAAAGGACTCGCTAAAGGAGCCGTTGG 546
Query 537 TATGGCTGGAATGGGACGTCACAAAATCAGCTTACCGTCT-CAATTCGCCGCCGCGTTTA 595
|||||||||||||||||||||||| ||| ||||||||| | || ||||||||||||||||
Sbjct 547 TATGGCTGGAATGGGACGTCACAACATCGGCTTACCGT-TGCAGTTCGCCGCCGCGTTTA 605
Query 596 GCTTCAACCGTAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCACCTTCTTCGGCA 655
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 606 GCTTCAACCGCAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCGCCTTCTTCGGCA 665
Query 656 ACGGACCTTACGTTTTCCTCCCCGGAATCCAAATCTCACGTCTTCAAAAAACTCCGCTTC 715
||||||||||||||||||||||||| ||||| |||||| | |||||||| || |||||||
Sbjct 666 ACGGACCTTACGTTTTCCTCCCCGGGATCCAGATCTCAAGGCTTCAAAAGACACCGCTTC 725
Query 716 TCATCAATCCGGGG 729
|||||||||| |||
Sbjct 726 TCATCAATCCAGGG 739
Score = 682 bits (369), Expect = 0.0
Identities = 495/556 (89%), Gaps = 8/556 (1%)
Strand=Plus/Plus
Query 729 GGAGTATTTCATCGGCGTAAGGGAGATTAAGATCGTGGAGAAAACAGTTCCGATCAATCA 788
||||||||| |||||||| | || |||||||||||| ||||||||| |||| ||| |||
Sbjct 778 GGAGTATTTTATCGGCGTGACGGCGATTAAGATCGTCGAGAAAACACTTCCAATCGATCC 837
Query 789 AATGCTATTGAAGATCAAC-AAAGAAACTGGATTCGGAGGTA-CAAAGATCAGCTCCGTA 846
|| ||| |||||||| ||| ||| |||||| | ||||| | |||| |||||||||||
Sbjct 838 AACGCTTTTGAAGATAAACGCAAG-TACTGGAATAGGAGGAACCAAA-ATCAGCTCCGTC 895
Query 847 AATCCGTACACTGTGTTGGAGTCATCGATCTTTAAATCTTTTACGTC-GATGTTTGTTAG 905
||||| ||||| ||||||||||||||||||| ||| |||||||||| || |||| ||||
Sbjct 896 AATCCTTACACGGTGTTGGAGTCATCGATCTACAAAGCTTTTACGTCGGA-GTTTATTAG 954
Query 906 ACAAGCAACAGCGAGGAACATGACGAGAGTAGCGTCGGTGAAACCGTTTAGCGCGTGTTT 965
||||||| | ||||||| ||| | |||||||||||||||||||||||| ||||||||||
Sbjct 955 ACAAGCAGCGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTT 1014
Query 966 CAGCACGCAGAACGTCGGCGTCACGCGCCTAGGATACGCAGTGCCGGAGATTCAGCTTGT 1025
||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1015 CAGCACGAAGAACGTTGGCGTCACGCGCCTAGGATACGCCGTACCGGAGATTCAGCTCGT 1074
Query 1026 GCTTCATAGCAATGACGTTGTTTGGAGGATCTTTGGAGGTAACTCGATGGTGAGTGTTAG 1085
|||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| ||
Sbjct 1075 GCTTCATAGCAAAGACGTCGTTTGGAGAATCTTTGGAGCTAACTCGATGGTGAGTGTCAG 1134
Query 1086 TGATGATGTCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCGA-GAACCTCTGTGG 1144
|||||| |||||||| || |||||||||||||||||||||||| | | || |||||||||
Sbjct 1135 TGATGACGTCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAAC-CCAGGAGCCTCTGTGG 1193
Query 1145 TGATCGGAGGGTTTCAGTTGGAGGATAATTTGATTGAATTTGATTTGGCGAGTAACAGAT 1204
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1194 TGATCGGAGGGTTCCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAAT 1253
Query 1205 TTGGGTTTAGTTCTACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCACTT 1264
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1254 TTGGGTTTAGTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTTAATTTCACTT 1313
Query 1265 CTACTGTTTGATTAAA 1280
| |||| |||||||||
Sbjct 1314 CCACTGCTTGATTAAA 1329
> AT1G03220.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:787122-788651 FORWARD LENGTH=1530
Length=1530
Score = 933 bits (505), Expect = 0.0
Identities = 659/733 (90%), Gaps = 12/733 (2%)
Strand=Plus/Plus
Query 1 tcatctctaacaatggcatcttctcaaatcatcttctccattcttcttctcttcatcttc 60
||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct 10 TCATCTCTAACAATGGCGCCTTCTCCGATCATCTTCTCCGTTCTTCTTCTCTTCATCTTC 69
Query 61 tcactctcatcatctGCT-AAACCATCTTCCCGTCCCAAAGCTCTCCTTCTCCCAGTAAC 119
|||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||
Sbjct 70 TCACTCTCATCATCTGCTCAAA-CACCTTTCCGTCCCAAAGCTCTCCTTCTCCCAGTAAC 128
Query 120 AAAAGACCAATCTACCCTCCAATACACAACCATCATCAACCAACGCACACCTCTCGTCCC 179
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 129 AAAAGACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCC 188
Query 180 CGCTTCCGTCGTCTTCGACCTCAGTGGCCGAGAACTCTGGGTCGACTGTGATAAAGGCTA 239
|||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||
Sbjct 189 CGCTTCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGGCTA 248
Query 240 CGTCTCAACCACATACCACTCCCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGCTC 299
|||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 249 CGTCTCCTCCACTTACCAGTCTCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGCTC 308
Query 300 CATCA-GCTGCGGTACATGCTTCTCACCTCCAAAACCTGGCTGTAGTAACAACACTTGCG 358
|| || ||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 309 CA-CAAGCTGCGGCACATGCTTCTCCCCTCCGAGACCTGGCTGTAGTAACAACACTTGCG 367
Query 359 GCG-CTTTTCCATCTAACTCCGTCACCGG-ATGGTCAACTTCAGGCGAATTTGCTTTAGA 416
||| | || || |||| |||| ||||| | | ||||||| |||||||||||||||||
Sbjct 368 GCGGCATT-CCGGATAACACCGTTACCGGTACCG-CAACTTCCGGCGAATTTGCTTTAGA 425
Query 417 CGTTGTCTCTATTCAGTCAACTAACGGATCCAACCCGGGTC-GGTTCGTTAAAATCCCCA 475
|||||| ||||| ||||| |||||||||||||| ||||| | || ||||||||||||| |
Sbjct 426 CGTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGG-CAGGGTCGTTAAAATCCCAA 484
Query 476 ATATAATATTC-AGTTGCGGATCAACCTCTCTTCTTAAAGGACTCGCTAAAGGAACCGTT 534
|| | || ||| | ||| ||| |||| | |||||||||||||||||||||||||||||||
Sbjct 485 ATTTGATCTTCGA-TTGTGGAGCAACGTTTCTTCTTAAAGGACTCGCTAAAGGAACCGTT 543
Query 535 GGTATGGCTGGAATGGGACGTCACAAAATCAGCTTACCGTCTCAATTCGCCGCCGCGTTT 594
|||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||||||||
Sbjct 544 GGTATGGCGGGAATGGGACGTCACAACATCGGTTTACCGTCGCAATTCGCCGCCGCGTTT 603
Query 595 AGCTTCAACCGTAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCACCTTCTTCGGC 654
|||||| |||||||||||||||| ||||| |||||||||| ||||||| |||||||||||
Sbjct 604 AGCTTCCACCGTAAATTCGCCGTCTGTCTAACTTCCGGTAAAGGCGTCGCCTTCTTCGGC 663
Query 655 AACGGACCTTACGTTTTCCTCCCCGGAATCCAAATCTCACGTCTTCAAAAAACTCCGCTT 714
|||||||||||||||||||| ||||||||||| |||||| |||| |||| || || |||
Sbjct 664 AACGGACCTTACGTTTTCCTTCCCGGAATCCAGATCTCAAGTCTCCAAACGACGCCCCTT 723
Query 715 CTCATCAATCCGG 727
|||||||||||||
Sbjct 724 CTCATCAATCCGG 736
Score = 686 bits (371), Expect = 0.0
Identities = 499/559 (89%), Gaps = 16/559 (3%)
Strand=Plus/Plus
Query 730 GAGTA-TTTCATCGGCGTAAGGGAGATT-AAGATCGTGGAGAAAACAGTTCCGATCAATC 787
||||| ||| |||||||| | || |||| || ||||| ||||||||||||||||||||||
Sbjct 778 GAGTACTTT-ATCGGCGTGACGGCGATTCAA-ATCGTCGAGAAAACAGTTCCGATCAATC 835
Query 788 AAATGCTATTGAAGATCAAC-AAAGAAACTGGAT-TCGGAGGTA-CAAAGATCAGCTCCG 844
|| |||||||||||| ||| ||| || || | ||||||| | |||| ||||||||||
Sbjct 836 CAACGCTATTGAAGATTAACGCAAG-TACCGG-TATCGGAGGAACCAAA-ATCAGCTCCG 892
Query 845 TAAATCCGTACACTGTGTTGGAGTCATCGATCTTTA-AAT-CTTTTACGTC-GATGTTTG 901
| ||||| ||||| |||||||||||||||||| || ||| |||||||||| || ||| |
Sbjct 893 TCAATCCTTACACGGTGTTGGAGTCATCGATC--TACAATGCTTTTACGTCGGA-GTTCG 949
Query 902 TTAGACAAGCAACAGCGAGGAACATGACGAGAGTAGCGTCGGTGAAACCGTTTAGCGCGT 961
||| ||||||| | ||||||| ||| | |||||||||||||||||||||||| ||||||
Sbjct 950 TTAAACAAGCAGCGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGT 1009
Query 962 GTTTCAGCACGCAGAACGTCGGCGTCACGCGCCTAGGATACGCAGTGCCGGAGATTCAGC 1021
||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 1010 GTTTCAGCACGAAGAACGTCGGCGTGACGCGCCTAGGATACGCCGTGCCGGAGATTGAGC 1069
Query 1022 TTGTGCTTCATAGCAATGACGTTGTTTGGAGGATCTTTGGAGGTAACTCGATGGTGAGTG 1081
|||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 1070 TTGTGCTTCATAGCAAAGACGTCGTTTGGAGGATATTTGGAGCCAACTCGATGGTGAGTG 1129
Query 1082 TTAGTGATGATGTCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCGAGAACCTCTG 1141
| |||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1130 TCAGTGATGACGTCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTG 1189
Query 1142 TGGTGATCGGAGGGTTTCAGTTGGAGGATAATTTGATTGAATTTGATTTGGCGAGTAACA 1201
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1190 TTGTGATTGGAGGGTTTCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACA 1249
Query 1202 GATTTGGGTTTAGTTCTACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCA 1261
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AATTTGGGTTTAGTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCA 1309
Query 1262 CTTCTACTGTTTGATTAAA 1280
|||| |||| |||||||||
Sbjct 1310 CTTCCACTGCTTGATTAAA 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5