BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484682

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29152.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   374    4e-103


> AT3G29152.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:11114052-11114491 
REVERSE LENGTH=440
Length=440

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 341/402 (85%), Gaps = 34/402 (8%)
 Strand=Plus/Plus

Query  3    ACAAAACTCAAACCTCAATTATTCTTAAAACTaaaaaaaaaaaaaaaaaaaaaaaTTGTA  62
            ||||||| |||| ||||||||||||||||||      |||||||||||||  || |||||
Sbjct  7    ACAAAACCCAAATCTCAATTATTCTTAAAAC-----CAAAAAAAAAAAAACCAATTTGTA  61

Query  63   AGACATGAAGTTTACAACATTGACACTGCTCGTGCTGGTGATAGCAATCGAATTGTCTCC  122
            ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct  62   AGACATGAAGTTTACAACATTGACACTGCTCGTGCTGGTGACAGTAATCCAATTGTCTCC  121

Query  123  AACGTTGATCAGAGCCACGATGGTTGAAGGTCCGACCGGAGATCAGAAAGTGACATGCAA  182
            ||| |||||||||||||| ||||||||||||||||||||||||  |    ||||||||||
Sbjct  122  AACTTTGATCAGAGCCACAATGGTTGAAGGTCCGACCGGAGAT--G----TGACATGCAA  175

Query  183  TGTACTTGATGTTAT-GATACCATGTTTACTACCGTT-A--A-C-C-AA----C--C-GA  228
            |  | | |||||||| | |||||||||| |||||||| |  | | | ||    |  | ||
Sbjct  176  TCCAATGGATGTTATTG-TACCATGTTTGCTACCGTTGACCAACTCTAAAATTCTACCGA  234

Query  229  CTCCACATTGTTGTCAAAGTAATGAG-AGAACACGAAACGTGTTTGTGTCAATTCATAAA  287
            |||||||||| |||||| |||||| | ||||||| |||||||||||||||||||||||||
Sbjct  235  CTCCACATTGCTGTCAA-GTAATG-GTAGAACACCAAACGTGTTTGTGTCAATTCATAAA  292

Query  288  AGGCGGCGAGTGGTG-GTCACAAGCACTTTTCAATTCTCCAAATGGTCAAAAAACTTGTA  346
            |||||  |  ||||  || |||||||||||| |||||||||||||||||||||||||| |
Sbjct  293  AGGCGT-G--TGGTACGT-ACAAGCACTTTTTAATTCTCCAAATGGTCAAAAAACTTGCA  348

Query  347  AAGCTTGTAATATTCCTTATCCTAAATGTTGAACCTCATGAT  388
            |||||||||||||||||| |||||  |||||| ||||| |||
Sbjct  349  AAGCTTGTAATATTCCTTTTCCTACTTGTTGATCCTCAGGAT  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5