BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484683
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29160.1 | Symbols: AKIN11, SNRK1.2, KIN11, ATKIN11 | SNF1 k... 2900 0.0
AT3G01090.2 | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 |... 874 0.0
> AT3G29160.1 | Symbols: AKIN11, SNRK1.2, KIN11, ATKIN11 | SNF1
kinase homolog 11 | chr3:11128625-11132065 REVERSE LENGTH=2067
Length=2067
Score = 2900 bits (1570), Expect = 0.0
Identities = 1701/1764 (96%), Gaps = 10/1764 (1%)
Strand=Plus/Plus
Query 115 GAAATGGATCATTCTTCGAATAGATTTGGGAATAATGGAGTGGAATCGATTTTACCGAAT 174
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 258 GAAATGGATCATTCATCAAATAGATTTGGCAATAATGGAGTGGAATCGATTTTACCGAAT 317
Query 175 TACAAGCTTGGTAAAACTCTTGGAATTGGATCTTTTGGGAAGGTGAAAATAGCAGAGCAT 234
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 318 TACAAGCTTGGTAAAACTCTTGGAATTGGGTCTTTTGGGAAGGTGAAAATAGCAGAGCAT 377
Query 235 GTTGTCACAGGGCATAAGGTTGCTATCAAAATCCTCAATCGTCGTAAGATCAAGAATATG 294
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 378 GTTGTCACAGGGCATAAGGTTGCTATCAAAATCCTTAATCGTCGTAAGATCAAGAACATG 437
Query 295 GAAATGGAAGAGAAAGTGAGAAGGGAGATTAAGATTCTACGCTTGTTTATGCATCCTCAT 354
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 438 GAGATGGAAGAGAAAGTGAGGAGGGAGATTAAGATTCTACGGTTGTTTATGCATCCTCAT 497
Query 355 ATTATTCGGCAATATGAGGTAATAGAGACCCCAAGTGACATTTATGTTGTCATGGAGTAT 414
||||||||||| |||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 498 ATTATTCGGCAGTATGAGGTAATAGAGACCACGAGTGACATTTATGTTGTGATGGAGTAT 557
Query 415 GTAAAGTCCGGAGAGCTCTTTGATTATATTGTTGAGAAAGGCAGATTGCAAGAGGATGAG 474
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 558 GTCAAGTCTGGAGAGCTCTTTGATTATATTGTTGAGAAAGGCAGATTACAAGAAGATGAG 617
Query 475 GCTCGTAACTTTTTCCAGCAGATAATATCTGGTGTAGAGTATTGCCATCGTAATATGGTT 534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 618 GCTCGTAACTTTTTCCAGCAGATAATATCTGGTGTAGAGTACTGCCATCGTAATATGGTT 677
Query 535 GTCCATAGAGACCTGAAGCCTGAGAATTTACTATTGGATTCGAGGTGCAACATTAAGATT 594
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 678 GTCCATAGAGACCTGAAGCCTGAGAATTTACTATTGGATTCGAGGTGTAATATTAAGATT 737
Query 595 GCAGACTTTGGGCTGAGTAATGTTATGCGGGATGGTCATTTTCTAAAGACGAGTTGTGGA 654
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GCAGACTTTGGGTTGAGTAATGTTATGCGGGATGGTCATTTTCTAAAGACGAGTTGTGGA 797
Query 655 AGTCCCAACTACGCTGCTCCTGAGGTTATATCAGGTAAATTATATGCTGGACCTGAAGTA 714
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 798 AGCCCCAACTACGCTGCTCCCGAGGTTATATCAGGTAAATTATATGCTGGACCTGAAGTA 857
Query 715 GATGTATGGAGTTGCGGAGTGATATTGTACGCTCTATTATGTGGTACTCTTCCATTTGAT 774
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 858 GATGTATGGAGTTGCGGAGTTATATTGTACGCTCTATTATGCGGTACTCTTCCTTTTGAT 917
Query 775 GATGAAAACATTCCCAACCTTTTCAAGAAAATAAAGGGTGGGATTTACACTCTTCCTAGT 834
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 918 GATGAAAACATTCCCAACCTTTTCAAGAAAATTAAGGGTGGGATTTACACTCTTCCAAGT 977
Query 835 CATTTATCATCTGAGGCTAGAGACCTGATCCCAAGGATGCTTATAGTTGACCCAGTGAAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 978 CATTTATCATCTGAGGCTAGAGACCTGATCCCAAGGATGCTTATAGTTGACCCGGTGAAA 1037
Query 895 CGGATCACCATTCCTGAGATCCGTCAACACCGTTGGTTCCAGACTCATCTCCCTCGTTAT 954
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 CGAATCACCATTCCTGAGATCCGTCAACACCGTTGGTTCCAGACTCATCTCCCTCGTTAT 1097
Query 955 CTTGCTGTTTCTCCACCAGATACAGTAGAGCAGGCTAAAAAGATCAATGAGGAGATAATT 1014
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1098 CTTGCTGTCTCTCCACCGGATACAGTAGAGCAGGCTAAAAAGATCAATGAGGAGATAGTT 1157
Query 1015 CAAGAAGTGGTTAACATGGGATTTGACAGAAACCAAGTTTTGGAATCTCTGCGCAACAGA 1074
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1158 CAAGAAGTGGTTAACATGGGATTTGATAGAAACCAGGTTTTGGAATCTCTACGCAACAGA 1217
Query 1075 ATACAAAACGATGCTACTGTTACATACTACCTGTTATTGGATAACCGGTTCCGTGTTCCA 1134
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ACACAAAACGATGCTACTGTTACATACTACCTGTTATTGGATAACCGGTTCCGTGTTCCA 1277
Query 1135 AGTGGCTATCTAGAATCCGAGTTTCAGGAGACAACAGACAGTGGTTCCAATCCTATGCGC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AGTGGCTATCTAGAATCCGAGTTTCAGGAGACAACAGACAGTGGTTCCAATCCTATGCGC 1337
Query 1195 ACACCTGAAGCGGGTGCTTCACCTGTAGGCCACTGGGTTCCTGCACATGTGGATCACTAC 1254
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1338 ACACCTGAAGCGGGCGCTTCACCTGTAGGCCACTGGATTCCTGCACATGTGGATCACTAC 1397
Query 1255 GGGTTGGGAGCAAGATCACAAGTGCCAGTTGACCGAAAATGGGCTCTTGGACTTCAGTCC 1314
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1398 GGGTTGGGAGCAAGATCACAAGTCCCTGTTGATCGAAAATGGGCTCTTGGACTTCAGTCT 1457
Query 1315 CATGCGCATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 CATGCGCATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTG 1517
Query 1375 TGTTGGAAGAAGATTGGTCACTACAACATGAAATGTCGATGGGTTCCTGGTATT-GCTGA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1518 TGTTGGAAGAAGATTGGTCACTACAACATGAAATGTCGATGGGTTCCTGGT-TTAGCTGA 1576
Query 1434 TGGTCAGAATACTATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCATTGA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 TGGTCAGAATACTATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCATTGA 1636
Query 1494 GGATGACTGTGCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAAAGC 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 GGATGACTGTGCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAAAGC 1696
Query 1554 TCGCGAAGAGAAGTACTTGCTAGATATCCAGAGAGTTAACGGTCCTCAGTTTCTCTTCTT 1613
|| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1697 CCGGGAAGAGAAGTACTTGCTGGATATACAGAGAGTTAACGGTCCGCAGTTTCTCTTCTT 1756
Query 1614 GGATCTATGCGCCGCCTTTCTTACAGAGCTTCGTGTGATCTGAC-GCTTTTAACCATTTT 1672
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1757 GGATCTATGCGCCGCCTTTCTTACAGAGCTTCGTGTGATCTGAATG-TTTTAACCATTT- 1814
Query 1673 GTTCAAACAttttttt-CTTTCATGTTCAATGGTTTGTAATAGTAGAGAACATAATATAA 1731
||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 GTTGAGACATTTTTTTTCTTTCATGTTCAATGGTTTGTAATAGTAGAGAACATAATATAA 1874
Query 1732 TATGTGGGTGCAGTGTTTACTTTGCCGGGTTACTTTTATATACCTGGATTCTAAGTTAAA 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TATGTGGGTGCAGTGTTTACTTTGCCGGGTTACTTTTATATACCTGGATTCTAAGTTAAA 1934
Query 1792 CTCTACTGTAATAGTAACTATCATTTCTTCtttttttAGATGGTCTTTTAAGGTTTGATC 1851
|||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 1935 CTCTACTGTAATAGTAACTATCCTTTCTTCTTTTT---GATGGT-TTTTAAGGTTTGATC 1990
Query 1852 ATGTGTACATAACTTAGTTGTTTC 1875
||||||||||||||||| ||||||
Sbjct 1991 ATGTGTACATAACTTAGCTGTTTC 2014
> AT3G01090.2 | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10
| chr3:31181-34487 REVERSE LENGTH=2208
Length=2208
Score = 874 bits (473), Expect = 0.0
Identities = 1192/1530 (78%), Gaps = 85/1530 (6%)
Strand=Plus/Plus
Query 150 TGGAGTGGAATCGATTTTACCGAATTACAAGCTTGGTAAAACTCTTGGAATTGGATCTTT 209
||| || ||||||||| |||| |||||||||||||| | ||||||||| ||||| || ||
Sbjct 443 TGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTGGTATTGGTTCCTT 502
Query 210 TGGGAAGGTGAAAATAGCAGAGCATG--TTGTCACAGGGCATAAGGTTGCTATCAAAATC 267
||| | |||||| ||||| ||||||| ||| ||||| ||||||||||||||||| |||
Sbjct 503 TGGTAGGGTGAAGATAGCTGAGCATGCATTG--ACAGGACATAAGGTTGCTATCAAGATC 560
Query 268 CTCAATCGTCGTAAGATCAAGAATATGGAAATGGAAGAGAAAGTGAGAAGGGAGATTAAG 327
||||||||||| || |||||||| ||||| ||||| ||||||||||| || ||||| ||
Sbjct 561 CTCAATCGTCGCAAAATCAAGAACATGGAGATGGAGGAGAAAGTGAGGAGAGAGATCAA- 619
Query 328 ATTC-T-ACG-CTTGTTTATGCATCCTCATATTATTCGGCAATATGAGGTAATAGAGAC- 383
| || | | | | | |||||||||||||| || || || | |||||||| ||||||||
Sbjct 620 AATCTTGA-GAC-TATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTATAGAGACT 677
Query 384 CCCAAGTGACATTTATGTTGTCATGGAGTATGTAAAGTCCGGAGAGCTCTTTGATTATAT 443
||| | || |||||| |||||||||||||||| || || || ||||| ||||| |||||
Sbjct 678 CCC-ACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTGACTATAT 736
Query 444 TGTTGAGAAAGGCAGATTGCAAGAGGATGAGGCTCGTAACTTTTTCCAGCAGATAATATC 503
||||||||| || |||||||| ||||||||||| | |||||||| ||||||||||||||
Sbjct 737 TGTTGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTTTTTCAGCAGATAATATC 796
Query 504 TGGTGTAGAGTATTGCCATCGTAATATGGTTGTCCATAGAGACCTGAAGCCTGAGAATTT 563
|| || || || |||||||| || ||||| || || |||||||| |||||||| || ||
Sbjct 797 AGGAGTGGAATACTGCCATCGAAACATGGTGGTTCACAGAGACCTCAAGCCTGAAAACTT 856
Query 564 ACTATTGGATTCGAGGTGCAACATTAAGATTGCAGACTTTGGGCTGAGTAATGTTATGCG 623
|| ||||| || | ||||| | |||||||| || ||||| ||||| || | |||||
Sbjct 857 GCTTTTGGACTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAACATAATGCG 916
Query 624 GGATGGTCATTTTCTAAAGACGAGTTGTGGAAGTCCCAACTACGCTGCTCCTGAGGTTAT 683
|||||||||||| | ||||| |||||||||||||| || || || ||||| ||||| ||
Sbjct 917 AGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCCGCTCCAGAGGTAAT 976
Query 684 ATCAGGTAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGCGGAGTGATATTGTA 743
|| || || ||||||||||| |||||||||||||| ||||| || || |||||| | ||
Sbjct 977 TTCGGGCAAGTTATATGCTGGCCCTGAAGTAGATGTCTGGAGCTGTGGTGTGATACTCTA 1036
Query 744 CGCTCTAT-TATGTGGTACTCTTCCATTTGATGATGAAAACATTCCCAACCTTTTCAAGA 802
|||||| | | ||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1037 CGCTCT-TCTCTGTGGGACGCTTCCATTTGATGATGAAAACATTCCCAACCTTTTTAAGA 1095
Query 803 AAATAAAGGGTGGGATTTACACTCTT-CCTAGTCATTTATCATC-TGAG-GCTAGAGACC 859
| |||||||| ||||| ||||| || ||||| |||||||| || || | ||||||||
Sbjct 1096 AGATAAAGGGAGGGATATACACA-TTACCTAGCCATTTATC-TCCTG-GTGCTAGAGATT 1152
Query 860 TGATCCCAAGGATGCTTATAGTTGACCC-AGTGAAACG-GATCACCATTCCTGAGATCCG 917
||||||| |||||||| |||||||||| | ||||||| | | ||||| |||||||||||
Sbjct 1153 TGATCCCCCGGATGCTTGTAGTTGACCCCA-TGAAACGAG-TAACCATCCCTGAGATCCG 1210
Query 918 TCAACACCGTTGGTTCCA-GACTCATCTCCCTCGTTATCTT-GCTGTTTCTCCACCAGAT 975
||||||| ||||||||| | ||||||| || | ||| || |||||| |||| ||||||
Sbjct 1211 GCAACACCCTTGGTTCCAAG-CTCATCTTCCGAGGTAT-TTAGCTGTTCCTCCTCCAGAT 1268
Query 976 ACAGTAG-AGCAGGCTAAAAAGATCAATGAGGAGATAATTCAAGAAGTGGTTAACATGGG 1034
|| || | | ||||| |||||||| | |||||||| | |||||||| | || |||||
Sbjct 1269 ACTGT-GCAACAGGCAAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGG 1327
Query 1035 ATTTGACAGAAACCAAGTTTTGGAATCTCTGCGCAACAGAATACAAAACGATG-CTACTG 1093
||||||||||||||| | | ||||| || |||||| ||| || || |||| | ||||
Sbjct 1328 ATTTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGATGGC-ACTG 1386
Query 1094 TTACATACTACCTGTTATTGGATAACCGGTTCCGTGT-TCCAAGTGGCTATCTAGAATCC 1152
| || ||||| ||| || |||| || || ||||||| || | |||| ||||| | |
Sbjct 1387 TGACGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTA-GTGGTTATCTCGGGGCT 1445
Query 1153 GAGTTTCAGGAGACAACAGACAG-TGGTTCCAATCC-TATGCG-CACACCTGAA-GCGGG 1208
|||||||| ||||| | || || | | || || ||||| | || | ||| |||
Sbjct 1446 GAGTTTCAAGAGACCATGGA-AGGTACT-CC---CCGTATGCATC-CAGCAGAAAGCGT- 1498
Query 1209 TGCTTCACCTGT-AGGCCACTGGG-TTCCTGCACATG-TGGA-TCA-CTACGG-GTTGGG 1262
|||||||||||| || ||| | || |||| | || || |||| | | | | || |||||
Sbjct 1499 TGCTTCACCTGTTAG-CCA-TCGGCTTCCAGGAC-TGATGGAAT-ATCAA-GGAGTTGGC 1553
Query 1263 A-GCAAGATCACAAGTGCCA-GTTGACCGAAAATGGGCTCTTGGACTTCAGTCCCATGCG 1320
| | |||| ||| | || ||||| ||||||||||||||||||||||||| | ||
Sbjct 1554 TTG-A-GATCTCAA-TACCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCT 1610
Query 1321 CATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTGTGTTGG 1380
||||| |||||||| |||| ||||| ||||||| || ||||| | ||||| ||||||
Sbjct 1611 CATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTATGTTGG 1670
Query 1381 AAGAAGATTGGTCACTACAACATGAAATGTC-GATGGGTTCCTG---GTATTGCTGATGG 1436
|||||||| || |||||||||||||| || | ||||||||||| | | || |||||
Sbjct 1671 AAGAAGATAGGGCACTACAACATGAAGTG-CAGATGGGTTCCTAACAGCAGCGCAGATGG 1729
Query 1437 TCA-GA--A-TA-CT--ATGGTCAACAATCAGCTGCACTTCAGAGATGAATCCAGCATCA 1489
| | | | || || ||| | | || || || |||| |||| || |||||||| |
Sbjct 1730 T-ATGCTCAGTAACTCGATGCACGATAA-CAACT--ACTTTGGAGACGAGTCCAGCATAA 1785
Query 1490 TTGAGGATGACTGT-GCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATAC 1548
| ||| | || | || | | || |||| ||| |||| |||||| ||||| | ||
Sbjct 1786 TAGAGAACGAA-GCAGCTGTTAAGTCGCCCAATGTTGTCAAGTTTGAAATTCAGTTGTAT 1844
Query 1549 AAAGCTCGCGAAGAGAAGTA-CTTGCTAGATATCCAGAGAGTT-AACGGTCCTCAGTTTC 1606
||| |||| || || ||||| || || ||| | |||||||| || ||||||||||| |
Sbjct 1845 AAAACTCGGGACGACAAGTATCTA-CTGGATTTGCAGAGAGTACAA-GGTCCTCAGTT-C 1901
Query 1607 TC-TTCTTGGATCTATGCGCCGCCTTTCTT 1635
| ||||||||||| || || || ||||||
Sbjct 1902 TTGTTCTTGGATCTGTGTGCTGCTTTTCTT 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5