BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484688
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29185.2 | Symbols: | Domain of unknown function (DUF3598) ... 857 0.0
> AT3G29185.2 | Symbols: | Domain of unknown function (DUF3598)
| chr3:11154929-11157207 REVERSE LENGTH=1399
Length=1399
Score = 857 bits (464), Expect = 0.0
Identities = 538/574 (94%), Gaps = 4/574 (1%)
Strand=Plus/Plus
Query 453 GCAGATTGGATTTTTCCCAAAGGAGAGAGCGTTTTCGTTGAGGTATCAAACCGCTGGAAT 512
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 558 GCAGATTGGATTTTTCCCAAAGGAGAGAGCGTTTTCGCTGAGGTACCAAACCGCTGGAAT 617
Query 513 GTTGGATACGACATTAAGGCAAGGCGTTCTCGGGGAAGATGACACTGGCGAAGAATCACC 572
|||||||||||| |||||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct 618 GTTGGATACGACGTTAAGGCAGGGCGTGCTCGGGGAGGATGACACGGGAGAAGAATCACC 677
Query 573 AAGAAATCTTAAACTTCCATCTCGGCGTCCTTCTTTAGTATGCGAGAACTGCTTGTATTC 632
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 678 AAGAAATCTTAAACTTCCATCTCGGCGTCCGTCTTTAGTATGTGAGAACTGTTTGTATTC 737
Query 633 TAAGGAGATGGATAGAAGGGCTAGAGCCTTTCACATTATGGATCCCAAAGGTGTTCTTGA 692
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 738 TAAGGAGATAGATAGAAGGGCTAGAGCCTTTCACATCATGGATCCTAAAGGTGTTCTTGA 797
Query 693 AATGCTTATTGTTTTCCTTGAGGAAAGAGGGTTAGACAATCTCACTCATCCAGTCCTCGA 752
|||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 798 AATGCTTATTGTTTTCCTCGAGGAAAGAGGGTTAGAGAATCTCGCTCATCCAGTCCTCGA 857
Query 753 TAACGCTCAAG-ATGATGCAGAAAGGATTATCCCATTTCTAGGTACTTGGAAAGGTCGTT 811
|||||||| || | |||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 858 TAACGCTC-AGAACGATGCAGAAAGGATAAACCCATTTCTCGGTACTTGGAAAGGTCGTT 916
Query 812 CAGTAACAAAACGAAGTGGTGTCTATGGAGCAACACTATCCGAATCCGATACTGTTGCTG 871
| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 917 CGGTAACAAAACGAAGCGGTGTCTATGGAGCAACACTATCAGAAGCCGATACTGTTGCTG 976
Query 872 TTCTTGAAATAAATGACAAAGGCCAAGTAGTCCAGGATATTTCCTCGACATCGGATGAGA 931
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 977 TTCTTGAAATGAATGACAAAGGTCAAGTAGTCCAGGATATTTCGTCGACATCGGATGAGA 1036
Query 932 AAAAAGTAACAACAAATGTACACTGGGAGGGGAAACA-GTCGAAAAACTTGGTTACATTC 990
||||||||||||||||||| |||||||| |||||| | ||||||| ||||||||||||||
Sbjct 1037 AAAAAGTAACAACAAATGTGCACTGGGAAGGGAAA-ATGTCGAAAGACTTGGTTACATTC 1095
Query 991 GCGGAAGGATACCAAATGACTCTGTTACCGGGAG 1024
||||||||||||||||||||||||||||| ||||
Sbjct 1096 GCGGAAGGATACCAAATGACTCTGTTACCCGGAG 1129
Score = 689 bits (373), Expect = 0.0
Identities = 425/450 (94%), Gaps = 3/450 (1%)
Strand=Plus/Plus
Query 10 ATGGCTGCTACTACTTCCTTCACTTGCTCACTTCCTTTTGCTCCACTAACCAAATCCCTC 69
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1 ATGGCTGCTGCTACTTCCTTCACTTGCTCACTTCCTTTTACTCCACTATCCAAATCCCTT 60
Query 70 AGACCCATTCAATCCCCAATTCTACGCTCGGGCTATGGAA-C--CAGAAGCTTTGTTATA 126
| |||||||| ||||||||||||||||| | |||||||| | ||||||||||||||||
Sbjct 61 AAACCCATTCGTTCCCCAATTCTACGCTCAGACTATGGAACCAGCAGAAGCTTTGTTATA 120
Query 127 AGATCCATGGCGGTTCAAGAAGATGACAAGAGAACAACCGATGAAGCAATGAGTATTGAC 186
||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 121 AGATCCATGACGGTTCAAGAAGATGACAAGAGAACAAGCGATGAATCAATGAGTATTGAC 180
Query 187 AATTTACGAGGATTTGTTGATCTTAATGTCGGAAAATGGACTGGCTCCTTTCATCAATTT 246
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATTTACGAGGATTCGTCGATCTTAATGTCGGAAAATGGACTGGCTCCTTTCATCAATTT 240
Query 247 GATGGTGATGGGAATTTGTTGCATAAGATTGATACACGTCTTTCAGCTAGTTCTTATGGA 306
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATGGTAATGGGAATTTGTTACATAAGATTGATACACGTCTTTCAGCTAGTTCTTATGGA 300
Query 307 GAAGATGAGCTTCTTAGTCTTAATCAATCGTTATATATAAAGCAGCCTACATCAGCTACT 366
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGATGAGCTCCTTAGTCTTAATCAATCGTTATATATAAAGCAGCCTACATCAGCTACT 360
Query 367 TCAGTTTCCGAAGAGGAAGAGGAGGAACCGGAATGGGTTGAATACAAAATTAAAGAAACC 426
||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 361 TCAGTTTCCGAAGAGGAGGAAGAGGAACCGGAATGGGTAGAGTACAAAATTAAAGAAACC 420
Query 427 AATATGTTCACTGTGGACAAATATCAGCAG 456
|||||||||||||||||||| |||||||||
Sbjct 421 AATATGTTCACTGTGGACAAGTATCAGCAG 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5