BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484691
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29240.1 | Symbols: | Protein of unknown function (DUF179) ... 1866 0.0
> AT3G29240.1 | Symbols: | Protein of unknown function (DUF179)
| chr3:11191491-11192986 FORWARD LENGTH=1233
Length=1233
Score = 1866 bits (1010), Expect = 0.0
Identities = 1119/1172 (95%), Gaps = 6/1172 (1%)
Strand=Plus/Plus
Query 1 ACTAGGCCTACACATCATCaaaaaaaaGGTGATAAAAGATTTGTCTCTTATCCAGAATCC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACTAGGGTTACACATCATCAAAAAAAAGGTGATAAAAGATTTGTCTCTTATCCAAAATCC 60
Query 61 AAACGCATATGGAAATGTTTATCTTTAAATACATCAACGCCTTAAAGGCTA-AGAACTAA 119
||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 61 AAAGGCATATGGAAATGTTTATCTTTAAATACATCAACACCTTAAAGGTTACGGAACTAA 120
Query 120 AGTGAATTTGAGTCAGAGAAAAAGAGAAAGAGAGAAGGTAACATGGATGCTTGTTTTCTT 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTGAA-TTGAGTCAGAGAAAAAGAGAAAGAGAGAAGGTAACATGGATGCTTGTTTTCTT 179
Query 180 ACATCAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCGTTTATGAAAGCAAGAATCTTT 239
|| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 180 ACCTCAAGATCAATCTCTGGTGTTAAAGAGCTTGTCCCGTTCATCAAAGCGAGAATCTTT 239
Query 240 ACTTGCCCCAAGAGAAATTCTGGCCAATTTATCACCAGGAAGGTTGCTTCTCCGATCTCT 299
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 240 ACTTGCCCCAAGAGAAATTCTGGCCAATTTGTTACCAGGAAGGTTGCTTCTCCGATCTCT 299
Query 300 GTAAATTGTTCTCTTTCGGATTCATGGAAGCCACTGGATGATGATTCTGATCTTTTCAAG 359
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 300 GTAAATTGTTCTCTTTCGGATTCATGGAAGCCACTGGAAGATGATGCTGATCTCTTCAAG 359
Query 360 GATTGTGTCAACAATTCTACAGAAGATGCTGATTGGAGGGAATTCAGGGCAAGGCTTGTT 419
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 360 GATTGTGTCAACAATTCTACATCAGATGCTGATTGGAGGGAGTTCAGGGCAAGGCTTGTT 419
Query 420 GTAGGGGAACAAGCTGCAACGTCCGAGAAGGATCAGCCCTCTTGGTCTAACCCGGACATG 479
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 GCAGGGGAACAAGCTGCAACGTCCGAGAAGGATCAGCCCTCGTGGTCTAACCCGGACATG 479
Query 480 GTGGTGGACTATCAGCCATCATCTTCCTCACTGATCACAATTGGAAGCAGATGGGCACAC 539
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 480 GTGGTGGACTATCAGCCATCATCGTCCTCACTGATCACAATTGGAAGCAAATGGGCACAC 539
Query 540 AAGATCCATGAGCCTGAAACAGGCTGCCTTCTAATCGCCACAGAGAAGCTAGATGGTGTC 599
|||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 540 AAGATCCATGAGCCAGAGACAGGCTGCCTCCTAATCGCCACAGAGAAGCTAGACGGTGTC 599
Query 600 CACATCTTCGAAAAGACGGTGATCCTTCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGA 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CACATCTTCGAAAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGA 659
Query 660 GTCATCTTAAACCGTCCATCGCTGATGTCGATTAAGGAGACCAAGTCAACGATATTAGAC 719
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GTCATCCTAAACCGTCCATCTCTGATGTCTATTAAGGAGACCAAGTCAACGATATTAGAC 719
Query 720 ATGGCAGGAACGTTTTCAGACAAAAGACTCTTCTTTGGTGGACCTTTGGAAGAAGGGTTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGGCAGGAACGTTTTCAGACAAAAGACTCTTCTTTGGTGGACCTTTGGAAGAAGGGTTG 779
Query 780 TTCTTGGTGAGTCCAAG-ATGTGGTGGAGGCAACGAAGTTGGTAAGAGCGGAGTGTTCAG 838
||||||||||||||||| | ||||||||| |||||| ||||||||||||||||| |||||
Sbjct 780 TTCTTGGTGAGTCCAAGGA-GTGGTGGAGACAACGAGGTTGGTAAGAGCGGAGTATTCAG 838
Query 839 ACAAGTAATGAAAGGATTGTACTATGGAACAAGAGAGAGTGTAGGATTGGCTGCAGAAAT 898
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 839 ACAAGTGATGAAAGGATTGTACTATGGAACGAGAGAGAGTGTAGGATTGGCTGCAGAGAT 898
Query 899 GGTGAAGAGGAATTTGGTTGGAAGAAGTGAGTTTAGATTCTTTGATGGGTATTGTGGTTG 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 GGTGAAGAGGAATTTGGTTGGAAGAAGTGAGCTTAGATTCTTTGATGGGTATTGTGGTTG 958
Query 959 GGAAAAAGAGCAGCTAAAAGCAGAGATCTTGGGAGGTTATTGGACAGTTGCTGCTTGTAG 1018
||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 959 GGAAAAAGAGCAGTTAAAAGCAGAGATCTTGGGAGGGTATTGGACTGTTGCTGCTTGTAG 1018
Query 1019 CTCCACTGTTGTTGAGCTTGGTTCAGCTGTCCAAAGTCATGGTCTTTGGGATGAGGTTCT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCCACTGTTGTTGAGCTTGGTTCAGCTGTCCAAAGTCATGGTCTTTGGGATGAGGTTCT 1078
Query 1079 TGGGCTTATTGGGCCTCAAACTGGCTCTGTTATCTAAAATCTTGTTTTTGTAATGCTTTT 1138
||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||
Sbjct 1079 TGGGCTTATTGGGCCTCAAACGGGCTCTGTTATCTAAAC-CTTGTTTTTGTACTGCATTT 1137
Query 1139 CACTAATGGTTTATGGTATAACTAT-TGTATG 1169
||||||||||||||||||| ||||| ||||||
Sbjct 1138 CACTAATGGTTTATGGTATGACTATGTGTATG 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5