BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484697
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29270.1 | Symbols: | RING/U-box superfamily protein | chr3... 1589 0.0
> AT3G29270.1 | Symbols: | RING/U-box superfamily protein | chr3:11234242-11236458
FORWARD LENGTH=1320
Length=1320
Score = 1589 bits (860), Expect = 0.0
Identities = 1040/1123 (93%), Gaps = 28/1123 (2%)
Strand=Plus/Plus
Query 679 GTTAAGTATTAG-CAGAAACAAGGTATTCATGTTATCCATTCCTGATACCAGAATGTGGA 737
|||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 159 GTTAGGTCTTAGTGACAAACAAGGTATTCATGTTATCCATCCCTGATACTAGAATGTGGA 218
Query 738 ATTTAGCATCGAGTTATCTTACGGGAAACATTGGACCGAAAAACGAAATAAGAAGACCAG 797
|| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 219 ATCTAGCATCGAGTTATCTTACGGGAAACATTGGACCGAAAAACGATATCAGAAGACCGG 278
Query 798 TTCATGCTCATGCGGAGTGTTCAGATGACGATGCATCTTCTGTAGGCAGTAAAGACGAAG 857
| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 279 TCCATGCTCATGCGGAGTGTTCAGATGACGATGTATCTTCTGTAGGTAGTAAAGACGAAG 338
Query 858 GTCTTGAGTGTCCTATTTGTTGGGAATCATTTAATATAGTTGAAAACGTTCCTTACGTGT 917
|||| ||||||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct 339 GTCTCGAGTGTCCTATATGCTGGGAATCATTTAATATAGTTGAAAACGTTCCGTATGTGT 398
Query 918 TATGGTGTGGACACACGATGTGTAAAAACTGCATTTTAGGACTTCAATGGGCTATTGTGA 977
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 399 TATGGTGTGGACATACGATGTGTAAAAACTGCATTTTGGGACTTCAATGGGCTATTGTGA 458
Query 978 AATTACCTACTCACCCGGTTCAGCTTCCTCTCTTCATTTCATGCCCCTGGTGTAACCTAT 1037
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 459 AATTGCCTACTCACCCGGTTCAGCTTCCTCTCTTCATTTCATGCCCCTGGTGCAACCTTT 518
Query 1038 TGTCCTTCCGTCTGGTATTCAGAGGAACACTCAGATTTCCTCACAAGAACTACTTTGTGC 1097
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 519 TGTCTTTCCGTCTGGTCTTCAGAGGAACACTCAGATTCCCTCACAAGAACTACTTTGTGC 578
Query 1098 TTTGGATGGTTGAGAGGATGAATGGCGAAAGACGCAACTCACCCGTTATAGCACAAAAC- 1156
|||||||||| |||||||||||||| || ||||| |||||||| | | ||| | ||||
Sbjct 579 TTTGGATGGTCGAGAGGATGAATGGAGAGAGACGTAACTCACCTGGTGGAGCTC-AAACA 637
Query 1157 GATGGGAACAATGACCATACAAGAGAAACTCCATCTCCATGTCTCCACAATCGCCATCAT 1216
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 638 GATGGAAACAATGATCATACAAGGGAAACTCCATCTCCATGTCTCCACAATCGCCATCAT 697
Query 1217 CGCAGTCAACCTGAACCATCACGTTCTGTTAATGATCATCGCATTCCCAGGGACAACATA 1276
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 698 CGCAGTCAACCTGAACCATCACGTTCTGTTAATGATCATCGCATTCCAAGGGACAACATA 757
Query 1277 CAAACTTCACTGAGGAAGTCTCTGGTTTTCTTTGTCCAATTGACAGCAAAGTTCCCATTG 1336
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 758 CAAACTTCACTGAGGAAGTCTCTGGTTTTCTTTGTCCAGTTGACAGCAAAGTTCCCATTA 817
Query 1337 GTTGTCATA-TTCTTGCTGATAATACTCTATGCAATACCGACAAGTGCAGCCATATTGGC 1395
||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 818 GTTGTCATATTTC-TGCTGATAATACTCTATGCAATACCGACCAGTGCAGCCATATTGGC 876
Query 1396 GATGTACATTCTAGTCACTCTCTTGCTGGCTCTACCGTCGTTTCTCATCCTCTACTTCGC 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GATGTACATTCTAGTCACTCTCTTGCTGGCTCTACCGTCGTTTCTCATCCTCTACTTCGC 936
Query 1456 CTATCCTTGTCTTGACTGGCTTGTCCGAGAGATTGTCACATGAACTTTCTAAGGATGCGT 1515
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 937 TTATCCTTGTCTCGACTGGCTTGTTCGAGAGATTGTCACATGAACTTTCTAAGGATGCGT 996
Query 1516 TCAGAAACTTCCCATTCCTAATTTGACGACTTTTCTTCAACAACTGAGACCCAAGATCGG 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TCAGAAACTTCCCATTCCTAATTTGACGACTTTTCTTCAACAACTGAGACCCAAGATCGG 1056
Query 1576 TCCGTCCTTCATGTAAGTATAACAATTTCGTAATTACCGTCTACCTTAT-TGATATATGG 1634
|| |||||||||||||||||||||||||||||||| | |||| | ||||||||
Sbjct 1057 TC--------ATGTAAGTATAACAATTTCGTAATTACCGTCTTCTTTATCT-ATATATGG 1107
Query 1635 ATGTAGTTATGGATTGCATTGTTGCTCTATGGAAGCTGGACGCATGTGTTGTAAGGGCTA 1694
|||||||| |||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 1108 ATGTAGTTTTGGATTGCATTGTTGCTCTACG-AAGCTGGACGTATGTGTTGTAAGGGCTC 1166
Query 1695 TTGCAGAAACTTATTAGTATTCTACTATTTGAGGATTTGTTTGTGATTGTTTGAGGTTTT 1754
||||||||||||||||||||| | | | | |||||||||||| |||||||| |
Sbjct 1167 TTGCAGAAACTTATTAGTATT-TG-T----G-G-ATTTGTTTGTGAGTGTTTGAG-T--- 1214
Query 1755 GTCTCAATAAGATTTGTGTATATAAAGTTTATGCACTGTTATT 1797
||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1215 GTCTCAATAAGATTTATGTATATAAAGTTTATGCAATGTTATT 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88905165195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5