BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484699
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29280.1 | Symbols: | unknown protein; Has 24 Blast hits to... 1083 0.0
> AT3G29280.1 | Symbols: | unknown protein; Has 24 Blast hits
to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:11236610-11237995 REVERSE
LENGTH=680
Length=680
Score = 1083 bits (586), Expect = 0.0
Identities = 646/674 (96%), Gaps = 7/674 (1%)
Strand=Plus/Plus
Query 1 ACTTTGGTAGAGTGTTAAAGAATCGA--T-T-TCTCTATCAAGCAACAATGGATgaagga 56
|||||||||| | |||||||||||| | | ||||| ||||||||||||||||||||||
Sbjct 1 ACTTTGGTAGTGAATTAAAGAATCGATTTCTCTCTCTCTCAAGCAACAATGGATGAAGGA 60
Query 57 agagaaggagagat--ag-agaagaagaagaaagaggaagaaggagaagtgaaggaagga 113
|||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AGAGAAGGAGAGATAGAGAAGAAGAAGAAGAAAGATGAAGAAGGAGAAGTGAAGGAAGGA 120
Query 114 gTAGCATCTATAGCTTTGTTGCCATGTGGGACTATCTCTGGTCATTTCATTCAGATGCCT 173
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTAGCATCAATAGCTTTGTTACCATGTGGGACTATCTCTGGTCATTTCATTCAGATGCCT 180
Query 174 AGCTCTATCTGTTATGGCCTCCATGGCACTGAACTGGCTTGTGAGACTGAGTGTAGCCGC 233
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGCTCTATCTGTTATGGCCTCCATGGCACTGAACTAGCTTGTGAGACTGAGTGTAGCCGC 240
Query 234 GGTGAGGATTATCGGTTGATTAAACTCACCATCATAGACTACAATAGGAAGAAGGAACAA 293
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 241 GGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAATAGAAAGAAGGAACAA 300
Query 294 ACAGTTGTAGTGGAATGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCT 353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCT 360
Query 354 CACGGGTGGGAGGAAGATGTGATAGGATTAGTCGAAGAAAAACACGGGAAGAAGAAAGTA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACGGGTGGGAGGAAGATGTGATAGGATTAGTCGAAGAAAAACACGGGAAGAAGAAAGTA 420
Query 414 TCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATAAAGCAGCAGAGGACCATATCAGA 473
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATGAAGCAGCAGAGGACCATATCAGA 480
Query 474 CAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTATTAACATTGGACCAATGAAGATT 533
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTATTAACATTGGACCGATGAAGATT 540
Query 534 TCCGGGCTTGATTTTGCTGTGGTGGAAGAGGAACACACAAACTAAGACAGCTTAACTCTT 593
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 541 TCCGGGCTTGATTTTGCTGCGGTGGAAGAGGGACACATAAACTAAGACAGCTTAACTCTT 600
Query 594 TCCTTTTGTGTATACATCGCATTTGAATGCTCTTTGAGTCTTTGTTTCATATCGTAGAAC 653
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTTTTGTGTATACATCATATTTGAATGCTCTTTGAGTCTTTGTTTCATATCGTAGAAC 660
Query 654 ACAATTAATGCTTT 667
|||||||| |||||
Sbjct 661 ACAATTAACGCTTT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5