BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484700
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR)... 2490 0.0
> AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:11238111-11240287 FORWARD LENGTH=2095
Length=2095
Score = 2490 bits (1348), Expect = 0.0
Identities = 1562/1667 (94%), Gaps = 8/1667 (0%)
Strand=Plus/Plus
Query 1 TTGCTGCGTTTAGCTCTTCACTGTATTATCATGGGAGCTGTCTGGTTGAGTCATGTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TTGCTGCGTTTAGCTCTTCACTGTATTATCATGGGAGCTGTCTGGTTGAGTCATGTCTCT 340
Query 61 CAATTGGATTGTGGATGTTATTCAATTGAGAAGAGCTGTTGTCTTTGGAGAACTTCTCAT 120
||||||| |||||||||||||| ||||||| |||||| |||| ||| |||||||| ||||
Sbjct 341 CAATTGGTTTGTGGATGTTATTTAATTGAGCAGAGCTCTTGTGTTTTGAGAACTTTTCAT 400
Query 121 TGGTCTTTGAGTCACTCGTTAG-ACTTTGCATTGACCATGAAGCCGAAACGAAGGCGTCT 179
||||||||||||||||| || | ||||| |||||||||||||||| ||||||||||||||
Sbjct 401 TGGTCTTTGAGTCACTCATT-GAACTTTACATTGACCATGAAGCCTAAACGAAGGCGTCT 459
Query 180 AGGTGTAAAAATGGAGTCTTTTTCTTTGGCAACACCAAAAATGTGTTTCAGGAAGGTGAG 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 460 AGGTGTAAAAATGGAGTCTTTTTCTTTGGCAACACCAAACATGTGTTTCAGGAAGGTGAG 519
Query 240 TAGTGAATTAGATAGCTCTTTCAACGGTGAAAATACGGTTTTTGGTTCGGAATTGGAGGA 299
|||||||||||| || |||||||||||||||||| ||||| ||||| |||| |||||||
Sbjct 520 TAGTGAATTAGACAGTTCTTTCAACGGTGAAAATGTGGTTTGTGGTTTGGAACTGGAGGA 579
Query 300 TGAAGA-TGGAGATGATAGGAATAGGATACATTTTTTAGAGGAGCGGAACGAAG-AGTTG 357
||||| || || ||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 580 -GAAGACTGCAGGGGATAGGAATAGGATACATTTTCTAGAGGAGCGGAACGAAGAAACT- 637
Query 358 TTATCGAAGAGGCTTCTGAAACTTAGCAGGTTGGATAAAGTCAGAAGCGCATTGGAGTTG 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTATCGAAGAGGCTTCGGAAACTTAGCAGGTTGGATAAAGTCAGAAGCGCATTGGAGTTG 697
Query 418 TTTGATTCTATGAGATTCTTGGGTTTACAACCTAATGCTCATGCATGTAACTCTTTTCTC 477
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 698 TTTGATTCTATGAGATTCTTGGGTTTACAACCTAATGCTCATGCCTGTAACTCTTTTCTC 757
Query 478 TCGTGTCTCTTGAGGAATGGAGATGTACAGAAAGCCTTTACCGTCTTTGAGTTGATGAGG 537
||||| |||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 758 TCGTGCCTCTTGAGGAATGGAGATATTCAGAAAGCTTTTACCGTCTTTGAGTTCATGAGG 817
Query 538 AAAAAGGAGAATGTCACAGGGCATACGTATAGCTTGATGTTGAAAGCTATTGCAGAGGTT 597
|||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| |||
Sbjct 818 AAAAAGGAGAATGTTACAGGGCACACGTATAGTTTGATGTTGAAAGCTGTTGCAGAAGTT 877
Query 598 AAAGGTTGTGATTCTGCACTAAGAATGTTTAGAGAACTAGAAAGGGAACCGAAATATAGG 657
|| ||||| || |||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 878 AAGGGTTGCGAGTCTGCATTAAGAATGTTTAGAGAACTAGAAAGGGAGCCGAAACGTAGG 937
Query 658 AGTTATTTCGATGTGGTTCTTTATAACACTGCTATTTCTCTATGTGGGCGGATAAATAAT 717
|||| ||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 938 AGTTGTTTTGATGTGGTTCTATATAATACTGCGATTTCTCTATGTGGACGGATAAATAAT 997
Query 718 GTGTATGAGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCAAATTGGAACAGAG 777
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 998 GTGTATGAGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCATATTGGAACAGAG 1057
Query 778 ATTACGTATTCTCTGCTTATTAGCATTTTTGTTAGGTGTGGGAGAAGCGAATTGGCACTT 837
||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||| |||
Sbjct 1058 ATTACATATTCTCTGCTTGTTAGCATTTTTGTTCGGTGTGGGAGAAGTGAATTGGCCCTT 1117
Query 838 GATGCGTATGATGAGATGGTTAACAACAAGATATCTCCAAGAGAAGATGCAATGTATGCG 897
|||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1118 GATGTGTATGATGAGATGGTTAACAACAAGATATCTCTGAGAGAGGATGCAATGTATGCG 1177
Query 898 ATGATAAGCGCGTGTACAAAGGAGGAAAAATGGGATTTGGCCCTAAAGATATTTCAGAGT 957
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1178 ATGATAAGTGCGTGTACAAAGGAGGAAAAATGGGATTTGGCCTTAAAGATATTTCAGAGT 1237
Query 958 ATGTTAAAGAAAGGGATCAAGCCTAATCTTGTTGCGTGCAATACTTTGATAAATTCGCTG 1017
||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1238 ATGTTAAAGAAAGGGATGAAGCCTAATCTTGTAGCTTGCAATACTTTGATAAACTCGCTG 1297
Query 1018 GGAAAGGCGGGCAAAGTCGGATTGGTGTTTAAGGTTTACAGTGTTGCAAAATCGTTGGGG 1077
||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1298 GGAAAGGCGGGTAAAGTCGGATTGGTGTTTAAGGTTTACAGTGTTTTAAAATCCTTGGGG 1357
Query 1078 CATAAACCAGACGAGTACACGTGGAATGCACTGCTCACAGCTTTATACAAAGCAAACCGA 1137
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1358 CATAAACCAGACGAGTACACGTGGAATGCGCTGCTCACGGCTTTATACAAAGCAAACCGA 1417
Query 1138 TATGAAGATGTTCTGCAGCTGTTTGATATGATAAGAAGCGAAAACCTGTGTTGTCTGAAT 1197
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1418 TATGAAGATGTTCTTCAGCTGTTTGATATGATAAGAAGCGAAAACCTGTGTTGTCTAAAT 1477
Query 1198 GAATATTTGTACAATACAGCTATGGTTTCATGCCAAAAGCTTGGTTATTGGGAGAAAGCT 1257
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1478 GAATATTTGTACAACACAGCTATGGTGTCATGCCAAAAGCTTGGTTATTGGGAGAAAGCT 1537
Query 1258 GTGAAGCTTTTGTATGAAATGGAAGGTTCGGGGTTAACAGTTTCAACTTCATCATATAAT 1317
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1538 GTGAAGCTTTTGTATGAAATGGAAGGTTCGGGTTTAACAGTTTCAACTTCATCATATAAT 1597
Query 1318 CTGGTGATAAGTGCTTGCGAAAAATCAAGGAAATCAAAAGTTGCATTGCTAGTGTATGAG 1377
|| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1598 CTAGTGATAAGCGCTTGCGAAAAATCAAGAAAATCGAAAGTTGCATTGCTAGTATATGAG 1657
Query 1378 CACATGGCTCAAAGGGATTGTAAGCCAAACACGTTTACTTATCTGTCACTGGTAAGAAGT 1437
|||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 1658 CACATGGCTCAAAGGGATTGTAAGCCAAACACGTTTACTTATCTTTCGCTTGTAAGGAGT 1717
Query 1438 TGTATCTGGGGTTCCCTTTGGGACGAGGTT-AAGGATATTCTAAAGAAAGTGGAACCCGA 1496
||||| |||||||||||||||||||||||| ||| |||| || |||||||||||||||||
Sbjct 1718 TGTATTTGGGGTTCCCTTTGGGACGAGGTTGAAG-ATATCCTTAAGAAAGTGGAACCCGA 1776
Query 1497 TGTGTCGCTTTACAACGCAGCTATACATGGGATGTGTTTAAGACGCGAGTTTAAGTTTGC 1556
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1777 TGTATCGCTTTACAATGCAGCTATACATGGGATGTGTTTGAGACGCGAGTTCAAGTTTGC 1836
Query 1557 AAAAGAACTGTATGTCAAAATGAGAGATATGGGTTTGGAACCGGATGGCAAAACCCGAGC 1616
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1837 AAAAGAGCTGTATGTCAAAATGAGAGAGATGGGTTTAGAACCGGATGGCAAAACCCGAGC 1896
Query 1617 TATGATGTTACAGAACTTAAAGAAACACCAAAAATAAGGTTATAATT 1663
||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1897 TATGATGTTACAGAATTTGAAGAAACACCAAAAATAAGGTTATAATT 1943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5