BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484701
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 911 0.0
> AT3G29300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant
structures; EXPRESSED DURING: 6 growth stages; Has 451 Blast
hits to 349 proteins in 91 species: Archae - 0; Bacteria -
85; Metazoa - 81; Fungi - 88; Plants - 18; Viruses - 1; Other
Eukaryotes - 178 (source: NCBI BLink). | chr3:11247011-11247652
FORWARD LENGTH=642
Length=642
Score = 911 bits (493), Expect = 0.0
Identities = 607/658 (92%), Gaps = 23/658 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGCTACAATGGTAATGGTAGTGAGCTTAGTCATGGTTTTAAGCTTAGTCTTAGTC 60
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCAGCAACATTGGTAATGGTAGTGAGCTTAGTCATGGTCTTAAGCTTAGTCTTAGTC 60
Query 61 CTACTAGCTGAACTCTACTGTTCTCTCTTACTCCGCCGCCGTCGAAACCATC-ACTCCCT 119
|||||||||||||||||||| |||||||||||||||||||| || ||| | |||||||
Sbjct 61 CTACTAGCTGAACTCTACTGCTCTCTCTTACTCCGCCGCCGCCG---CCA-CAACTCCCT 116
Query 120 CAACCTCCCCAT---CACCACCGTCTCCACCGCAGCAACAACAACCACCACAACTCTAAA 176
|||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 117 CAACCTCCCCATCACCACCACCGTCTCCACCGC--C-GCAAGAACCACCACAACTCTAAA 173
Query 177 CCAAGTCATCTCCACCACAAGCAACGACAACACTTCACCATCAAACATCAATTCTTCTTC 236
||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 174 CCAAGCCATCTCCACAACAAGCAACGACAACACTTCACCATCTAACATCAATTCTTCTTC 233
Query 237 ACCAAATCCTCTCTACACAGGTGTTCTTCAAACTCCAACCAAAACCCATTTTCACCATGA 296
|| ||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||
Sbjct 234 TCCTAATCCTCTCTACACAGGCGTTATTCAAACTCCAACCAAAACCCATTATAACCATGA 293
Query 297 ACCATCTTTACAAGCTTCTCTTGATCTGATTCAAGAAACCATTGTTAACGATTCTGGTGA 356
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 294 ACCATATTTACAAGCTTCTCTTGATCTGATTCAAGAAACCATTGTTAACGATTCT-GT-A 351
Query 357 TAATAACTTCATCTACATATCAAACCCAATGTACTCAAACGAAGCTACAAGTAAACCAAC 416
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 352 -GACAACTTCATCTACATATCAAACCCAATGTACTCGAACGACGCTACAAGTAAACCAAC 410
Query 417 CACACCGTTTGAAACCCCTGAGTCTTCACCGTCACGGCTTGAAACCGGTGAGTCATCATC 476
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 411 CACACCATTTGAAACCCCTGAGTCTTCACCGTCACGTCTTGAGACCGGTGAGTCATCATC 470
Query 477 GTCTTCTTCCGGCGAGGAAGAAGATAACG---ATATAATCGAAGTTTCAACACCAACATT 533
|||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 471 CTCTTCTTCCGGC---GAAGAAGATAACGATCATATAATCGAAGTTTCAACGCCAACATT 527
Query 534 AGCTCCAATGAAGGATCTACCTGAAAAAGCATGCTCTGTTTCACTAAAAAATGTGGAAAC 593
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 528 AACTCCAATGAAGGATCTACCTGAAAAGGCATGCTCTGTTTCACTAAAAAATGTGGAAAC 587
Query 594 TTCTGCTAGTGAATCAAATTCGTCGTCTGGTTCGCCGTATACTTCACCGTCGTGGTAG 651
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 588 TTCTGCTAGTGAATCAAA--C-TCGTCTGGTTCGCCGTATACTTCACCGTCGTGGTAG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5