BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484707
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29385.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 854 0.0
> AT3G29385.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1);
Has 74 Blast hits to 74 proteins in 11 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11284395-11285402
REVERSE LENGTH=657
Length=657
Score = 854 bits (462), Expect = 0.0
Identities = 588/650 (90%), Gaps = 4/650 (1%)
Strand=Plus/Plus
Query 10 TCAAGACCGAAGAAGCGTAAAG-GTTCAACCTTTTTACAATCACCATGGCACAAAGTATA 68
|||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 10 TCAACACGGAAGAAGCGT-AAGAGTTCAACCTTTTTACAATCACCATGGCACAAAGTATA 68
Query 69 TCTACAAGGTTCAGAGTTATGTCACAGTATCAGAATTGCTGAAGAAGAATGGGGCCTTGC 128
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 69 TCTACAAGGTTCAGAGTTATGTCACAACATCAGAATTGCTGAACAAGAATGGAACCTTGC 128
Query 129 GACAAATACGCTAAGTGAGAAGGTCGATACAAATGAGGCAATATCTCCATCAAAGAGAAG 188
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 129 GACAAATACACTAAGTGAGAAGGTCGATACAAATGAGGCGATATCTCCATCAAAGAGAAG 188
Query 189 GCTTGTTTTATCCACACAACTTATGCAACAGCTTCTCCAACCAGCACCAGCGTTTGTTTT 248
|||| ||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 189 GCTTCTTTCATCTACACATCTTATGCAACAGCTTCTCCAACCAGCACCAACGTTTGTTTT 248
Query 249 CTTAGGCGACAATGCAGCTCTCAACTACGAAATCGTGCTTTACTTTGTGTCGAGAATCAC 308
||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 249 CTTGGGCGACAACGCAGCTCTTAACTACGAAATCGTGCTTTACTATGTGTCGAGAATCAA 308
Query 309 CCTCGCTGATTCATGTTCTCTCAAATGCCGCTCGGATTTGGATAAGAGCATAAATCGTCT 368
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 309 CCTCGCTAATTCATGTTCTCTAAAATGTCGCTCGGATTTGGATAAGAGCATAAATCGTCA 368
Query 369 AACTTCGAAGACAGCTAGTGATCTAGATCACCGATATTCTTCGCTCGTCAATGCTTTCAA 428
||||||||||||||||||| ||| |||||| | | |||||| || ||||||||||||||
Sbjct 369 AACTTCGAAGACAGCTAGTAATCAAGATCAGCAACATTCTTTACTTGTCAATGCTTTCAA 428
Query 429 TGAAAAAATACATAAGCTGGAAAGTGACTTTCAATGCTTGGAGAGGACCACATCGATATT 488
||| |||||||| ||||| ||||| |||| ||| | || |||||||| ||||| |||||
Sbjct 429 TGAGAAAATACAGAAGCTTGAAAGCAACTTCCAAAGTTTAGAGAGGACTACATCAATATT 488
Query 489 AGACATCATCTTCAAAATCCAAGACCTCGAAAGATTCTCCGTGATAAACCATCTCGGCAA 548
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 489 AGACATCATCTTTGAAATCCAAGACCTCGAAAGATTCTCTATGATAAACCATCTCGGCAA 548
Query 549 GTTTCATAACCGCACAAAGACCATTACAAGACCTATTCCGCAGAGATACATTGTTG-GAA 607
||||||||||||| |||||||| ||| ||||| ||||||||| | |||| ||||| ||
Sbjct 549 GTTTCATAACCGCGCAAAGACCTTTAAAAGACTTATTCCGCATAAATACGCTGTTGCGA- 607
Query 608 TACAAATGCCAACGAACCTGCCCGAGCCACTATATTGTCTTCCTCTGTGA 657
|||||||||||| |||||| || ||||||||| |||||||||||||||||
Sbjct 608 TACAAATGCCAATGAACCTACCAGAGCCACTACATTGTCTTCCTCTGTGA 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5