BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484709
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29400.1 | Symbols: ATEXO70E1, EXO70E1 | exocyst subunit exo... 2796 0.0
> AT3G29400.1 | Symbols: ATEXO70E1, EXO70E1 | exocyst subunit exo70
family protein E1 | chr3:11297283-11299620 REVERSE LENGTH=2338
Length=2338
Score = 2796 bits (1514), Expect = 0.0
Identities = 1861/2021 (92%), Gaps = 54/2021 (3%)
Strand=Plus/Plus
Query 39 ATGGGAGAGTTTGAGGTAGATGGAGAGGAGAAGTTGATTGTTGCTGCTAAGTATGTTGTG 98
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 306 ATGGGAGAGTTTGAGGTAGATGGAGAAGAGAAACTGATTGTTGCTGCTAAGTATCTTGTT 365
Query 99 AAGGAACTTAGATCTGGTAAGAGTCTTACTAAAAATGCTAAGAAGGTTTTGGGGAATCTC 158
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 366 AAGGAACTTAGATCTGGTAAGAGTCTTACTAAAAATGCTAAGAATGTTTTAGGCAATCTC 425
Query 159 TTATTGGAG-TTGTCTCGTGTGGTCATAGCT---G------AGGATAGAGATGAGGAAGA 208
||||| ||| || ||||||||||| |||||| | |||||||||||||||||||
Sbjct 426 TTATTAGAGCTT-TCTCGTGTGGTGATAGCTGAGGATACTCAGGATAGAGATGAGGAAGA 484
Query 209 TGAAATAGGTGAGATTGAGCAAAGGCTTAATGTTGTTAGTGAGAAGATTATGACTAGGGA 268
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 485 TGAAATAGGTGAGATTGAGGAAAGGCTTAATGTTGTTAGTGAGAAGATTATGACTAGAGA 544
Query 269 AGTCGATGAATCGATGATTTGGGATTTGGGTTCAGATGAAGGTAATCTGTATTTGGATGC 328
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 545 AGTCGATGAATCAATGATTTGGGATTTAGGTTCAGATGAAGGTAATCTGTATTTGGATGC 604
Query 329 TGTGAATGAGTTGAGGAGTTTGATTGAACGGTTGAACGGTTCTTCGGGTTTAGGGAAGGC 388
||||||||||||||| || | ||| | ||| | || || ||| | | |
Sbjct 605 TGTGAATGAGTTGAGAAG--T--TTG-A---TTG-A-------TC-GG-TTA--G-A--C 641
Query 389 GGGAAGTGAGGAGCTTTCTTTAAGAAAAGCTCATGATGTTCTTCAAACGGCGATGGCACG 448
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 642 -GGAAGTGAGGAGCTTTCTTTAAGAAAAGCTCATGATGTTCTTCAAATAGCTATGGCACG 700
Query 449 GCTTGAGGATGAGTTTAAGCATCTTCTTGTGGAGAATAGATTGCCTTTTGAGCTTGAACA 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GCTTGAGGATGAGTTTAAGCATCTTCTTGTGGAGAATAGATTGCCTTTTGAGCTTGAACA 760
Query 509 TTCGTCGTTTCGGTCTGTTGAAGCGGATCATGGTGTGGAAGAAGAGGCCATAGCTTCGTT 568
|||||||||||||||| |||||||||||||||||||||| |||||| |||| ||||| ||
Sbjct 761 TTCGTCGTTTCGGTCTATTGAAGCGGATCATGGTGTGGAGGAAGAGTCCATGGCTTCTTT 820
Query 569 TGGCGCTGCTTCTACTGAGGATTTGATTCTTGGAAGCAATAACGATAGTAGGAGAAACTC 628
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 821 TGGTGCTGCTTCTACTGAGGATTTGATTCTTGGAAGTAATAATGATAGTAGGAGAAACTC 880
Query 629 AGGGGAAATTGTGGTTGATTTGATTAATCCTGATGTTATATCAGATCTCAAGAACATTGC 688
|||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 881 AGGGGACGTTGTGGTTGATTTGGTGAATCCTGATGTTATATTAGATCTCAAGAACATTGC 940
Query 689 -AACCACTATGATTGCTTCGGGGTATGACCGCGAGTGTATCCAGGTATGTACAATGGTTA 747
|| |||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||
Sbjct 941 GAAT-ACTATGATTGCTTCAGGGTATGACCGTGAGTGTATTCAGGTGTGTACAATGGTTA 999
Query 748 GAAAAGATGCGTTGGATGAGTTTCTT-TATAACCACGAGGTCGAGAAGTTGAGTATTGAA 806
|||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 1000 GAAAAGATGCTTTGGATGAGTTT-TTGTATAACCATGAGGTTGAGAAGTTGAGTATTGAA 1058
Query 807 GATGTTTTGAGGATGGATTGGGCTACGTTAAATACGAATATCAAGAAATGGGTTCGGGTT 866
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1059 GATGTTTTGAGGATGGATTGGGCGACGTTGAATACGAATATCAAGAAATGGGTTCGGGTT 1118
Query 867 GTGAGAAATATCGTCCAGATATATCTCTTGAGCGAGAAGTCTCTGGACAATCAGATATTT 926
||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1119 ATGAGAGATATCGTCCAGGTATATCTCTTGAGTGAGAAGTCTCTGGATAATCAGATCTTT 1178
Query 927 GGGGACCTAAATGAGATCGGTCTAACATGTTTCGTCGATACTGTGAAGGCTCCGATGATG 986
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GGAGACTTGAATGAGATCGGTCTAACATGTTTCGTCGATACTGTGAAGGCTCCGATGATG 1238
Query 987 CAGTTGCTCAATTTTGGTGAAGCTGTGTCTCTTGGTCCACGACAGCCCGAGAAATTGCTT 1046
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1239 CAGTTGCTTAATTTTGGTGAAGCTGTGTCTCTTGGTCCACGACAACCTGAGAAATTGCTT 1298
Query 1047 AGGATTCTTGAAATGTACGAGCTAGCATCCGAGCTTTTACCAGAGATCGATGCTTTGTTC 1106
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1299 AGGATTCTTGAAATGTATGAGCTAGCATCTGAGCTTTTACCAGAGATCGATGCTTTGTTC 1358
Query 1107 TTGGATCATCCCGGTTCATCCGTAAGAACAGAATATAGGGAAGTGATGAGGAGACTCGGG 1166
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1359 TTGGATCATCCCGGTTCGTCCGTAAGAACCGAATACAGGGAAGTGATGAGGAGACTTGGG 1418
Query 1167 GACTGTGCAAGAACAACGTTTCTTGAATTCAAAAGTGCGATTGCATCGGATGTCTCATCG 1226
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1419 GATTGTGCAAGAACAACGTTTCTTGAATTCAAAAGTGCGATTGCAGCGGATGTCTCATCG 1478
Query 1227 CATCCTTTCCCTGGAGGCGCGGTTCACCCGCTTACAAATTACGTGATGAATTACCTCATG 1286
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1479 CATCCTTTCCCTGGAGGCGCGGTTCACCCGCTTACAAACTACGTGATGAATTACCTCATG 1538
Query 1287 GCGCTAACGGATTTCAGCCACACGCTCGACTCTCTTCTAATGGAACACGACGATGTAGAA 1346
|| ||||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||
Sbjct 1539 GCTCTAACAGATTTCAAACACACGCTCGACTCTCTTCTAATGGAACATGATGATGCAGAA 1598
Query 1347 GATCTCACAATACCTCCATCGCCGGATATTATCAATCCCGTGATGGTCGAAGAAGAGTCA 1406
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GATCTCACAATACCACCATCGCCGGATATTATCAATCCCGTGATGGTCGAAGAAGAGTCT 1658
Query 1407 ACCTACGAAAACTCTTCTTCACCTGACAAATTTCTGGCAATGACCCGACATTTCTACTCC 1466
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1659 ACCTACGAAAACTCCTCTTCACCGGAGAAATTTCTGGCAATGACCCGACATTTCTACTCC 1718
Query 1467 ATAACCTCTGCCCTCGAAGCCAACCTTCAAGAGAAATCAAAACTATACAAAGATGTCTCT 1526
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 ATAACCTCTGTCCTCGAAGCCAACCTTCAAGAGAAATCAAAACTATACAAAGATGTCTCT 1778
Query 1527 CTACGACACATTTTTCTCCTCAACAACATACACTACATGACCCGAAAAGTACTAAAGTCC 1586
|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1779 CTACAACACATTTTTCTCCTCAACAACATACACTACATGACCCGGAAAGTGCTAAAGTCC 1838
Query 1587 GAGCTGAGACATATCTTCGGTGACAAATGGAACCGAAAACATACATGGAAGTTTCAGCAG 1646
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1839 GAGCTGAGACACATCTTCGGCGACAAATGGAACCGAAAACATACATGGAAGTTTCAGCAG 1898
Query 1647 CAATCAATAGAGTATGAACGCGCAACCTGGCTCCCTGTCCTATCCTTCCTCAAGGACGAT 1706
||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1899 CAAGCAACAGAGTACGAACGCGCAACCTGGCTCCCTGTCCTATCGTTCCTCAAGGACGAT 1958
Query 1707 --T-CTGGTTCCAG-C----T-CAGG-TCA--T---GGTTCGAAGAATCTACGCCCAAGG 1751
| | ||||| | | | | || ||| | ||||| |||||||||||||| |||
Sbjct 1959 GGTTCAGGTTCTGGTCCCGGTTCTGGCTCAGGTTCTGGTTCAAAGAATCTACGCCCGAGG 2018
Query 1752 GAGCGGTTCCAAGGATTCAACACTGCGTTTGAGGAAGTGTATAAGGCGCAAACCGGGTGG 1811
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 2019 GAGCGGTTCCAAGGATTCAACACTGCGTTCGAGGAAGTGTACAAAGCGCAAACCGGATGG 2078
Query 1812 CTAATATCCGATGAGGGGCTAAGAGAAGACGTGAGGACAAAGGCGTCAATGTGGGTGATT 1871
||||| || || ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 2079 CTAATTTCGGACGAGGGGCTAAGAGAAGATGTAAGGACAAAGGCGTCCATGTGGGTGATT 2138
Query 1872 CAAGCGTATTGGACATTTTACAGTAGACACAAGAACAATGTGAGTGAAAGGTATATTAAG 1931
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 2139 CAAGCGTATTGGACATTTTACAGTAGACACAAGAACAGTGTCAGTGAAAGGTATATAAAG 2198
Query 1932 TACACTACTGATGATCTTGAGAGACTCTTGTTGGATCTCTTTGCTGGTTCTCCTAAATCC 1991
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2199 TACACTACTGATGATATTGAGAGACTCTTGTTGGATCTCTTTGCTGGTTCTTCTAAATCC 2258
Query 1992 TTGAACAATTCTTATAGAAGATGATTATAAATTGTGTTATG 2032
||||||||||||||||||||||||| |||||||||||||||
Sbjct 2259 TTGAACAATTCTTATAGAAGATGATGATAAATTGTGTTATG 2299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101806705260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5