BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484714
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29590.1 | Symbols: AT5MAT | HXXXD-type acyl-transferase fam... 1742 0.0
> AT3G29590.1 | Symbols: AT5MAT | HXXXD-type acyl-transferase family
protein | chr3:11398917-11400266 REVERSE LENGTH=1350
Length=1350
Score = 1742 bits (943), Expect = 0.0
Identities = 1240/1374 (90%), Gaps = 57/1374 (4%)
Strand=Plus/Plus
Query 1 ATGGTGAATTTCAACTCAGCCGTTAACATACTTGTGGTGGTCCGAGTTAGCCCGCCGTCT 60
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1 ATGGTGAATTTCAACTCAGCCGTTAACATACTTGAGGTGGTCCAAGTTAGCCCGCCGTCT 60
Query 61 TCTAACTCGCTCACACTCCCACTCACTTACTTTGACTTAGGTTGGCTCAAACTTCACCCC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCTAACTCGCTCACACTCCCACTCACTTACTTTGACTTGGGTTGGCTCAAACTTCACCCC 120
Query 121 GTTGACCGAGTTCTTTTCTACCGCGTCCCCGAGCTGACTCGCTGTTCTCTCATCACTCAA 180
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||
Sbjct 121 GTTGACCGAGTTCTTTTCTACCACGTCCCCGAGCTGACTCGCTCTTCTCTCATCTCT-AA 179
Query 181 A-TCAAGTCCTCTCTCTCAGTCACGCTCCTCCACTATCTCCCGCTCGCTGGCCGCCTCGT 239
| | |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 180 ACTTAAGTCCTCTCTCTCAGCCACGCTCCTCCACTATCTCCCACTCGCCGGCCGCCTCGT 239
Query 240 GTGGGACTCAATCGACACCAAACCGTCCATTGTCTATTCTCCTAACGACGAAGATGGCGT 299
|||||| |||||| | |||||||| |||||||||||||||||| ||||| |||||| |||
Sbjct 240 GTGGGATTCAATCAAAACCAAACCATCCATTGTCTATTCTCCTGACGACAAAGATGCCGT 299
Query 300 GTATCTCACGGTAGCTGAGTCTAATGGTGATCTCTCCCATCTAGCCGGAGATAAACCTCG 359
|||||||||||||||||||||||| ||||| || |||||||| |||||||| |||||||
Sbjct 300 GTATCTCACGGTAGCTGAGTCTAACGGTGACCTTTCCCATCTTTCCGGAGATGAACCTCG 359
Query 360 CCCCGCCATC-GATTTTCATCCTTTAGTCCCTGAGTTACCGGTTTCCGACGAATCGGCTG 418
||||||| | || |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 360 TCCCGCCA-CGGAGTTTCATTCTTTAGTCCCTGAGTTACCGGTTTCCGACGAATCAGCTC 418
Query 419 GCGTTCTCGCCGTTCAAATAACGTTTTTTCCC-AACCAAGGGTTTTGTCTCGGCGTAACC 477
|||||||||||||||| ||||| |||||||| |||||||| |||| |||||||||||||
Sbjct 419 GCGTTCTCGCCGTTCAGGTAACG-TTTTTCCCAAACCAAGGATTTTCTCTCGGCGTAACC 477
Query 478 GCACATCATGCCGTTTTAGACGGAAAAACAACAGCCATGTTTCTCAAAGCATGGGCTCAC 537
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 478 GCACATCATGCCGTTTTAGATGGTAAAACAACAGCCATGTTTCTCAAAGCATGGGCTCAC 537
Query 538 AACTGTAAACAAGAACAAGAATGTGGTCACATTGCTCTGCCTCTGCCACATGATCTAATC 597
||||||||||||||||||||| | | | || ||| | || |||||| |
Sbjct 538 AACTGTAAACAAGAACAAGAA-G----C---T--CT--GCCAC----AC--GATCTAGTA 579
Query 598 CCTTCTTTAGATCGTACCATTGTTCAAGACCCAACGGGACTCGAGACAAAACTCTTGAAC 657
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CCGTCTTTAGATCGTATCATTGTTCAAGACCCAACGGGACTCGAGACAAAACTCTTGAAC 639
Query 658 CGTTGGATATCAGCTTCCAACAACAAACCAAGCTTAAAACTGTTTCCTTCCAAAATAATC 717
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CGGTGGATATCAGCTTCCAACAACAAACCAAGCTTAAAACTGTTTCCTTCCAAAATAATT 699
Query 718 GGATCCGACATTCTCCGAGTCACGTACCGGTTAACTCAAGAAAACATCAAGAAACTACGT 777
|||||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 700 GGATCCGATATTCTCCGAGTCACGTACCGGTTAACTCGAGAAGACATCAAGAAGCTACGT 759
Query 778 GAACGAGTGGAGACCGAGTCACACGCTAAGCAGCTCCGTTTGTCGACTTTTGTCATCACT 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 760 GAACGAGTGGAGACCGAGTCACACGCTAAGCAGCTCCGTTTGTCGACTTTTGTCATTACT 819
Query 838 TACGCTTACGTTATAACATGCATGGTGAAGATGCGTGGAGGTGACCCGACCCGGTTTGTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TACGCTTACGTTATAACATGCATGGTGAAGATGCGTGGAGGTGACCCGACCCGGTTTGTG 879
Query 898 TGTGTTGGTTTTGCATCGGACTTCCGGTCCCGGTTAAACCCTCTGTTACCGTCGACATTC 957
|| |||||||||||||| ||||| ||||| ||||||||||||| ||||||| |||| |||
Sbjct 880 TGCGTTGGTTTTGCATCAGACTTTCGGTCACGGTTAAACCCTCCGTTACCGCCGACGTTC 939
Query 958 TTCGGGAACTGCATTGTCGGGTCGGGAGATTTCGAC---A--G-AGAA--------GGAA 1003
|||||||||||||||||||||||||||||||||||| | | |||| ||||
Sbjct 940 TTCGGGAACTGCATTGTCGGGTCGGGAGATTTCGACGTGAAAGCAGAACCAATATTGGAA 999
Query 1004 -AAGGT-----------TTT-ATCTCGGTGGTCAAGAGTTTGACCGGATGGGTCAACGGA 1050
|||| ||| ||| ||| ||| ||| ||||||||||||||||||||||
Sbjct 1000 GAAGGAGAAGGAAAAGGTTTCATCACGGCGGTGGAGACTTTGACCGGATGGGTCAACGGA 1059
Query 1051 TTGTGTCCGGAGAATATAGAGAAGAATATGCTTTTGCCGTTCGAGGCGTTTAAGAGGATG 1110
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1060 TTGTGTCCGGAGAATATAGAGAAGAATATGCTTTTACCGTTTGAAGCGTTTAAGAGGATG 1119
Query 1111 GAACCGGGAAGACAAATGATTTCGGTTGCTGGGTCGACCCGGTTAGGGATTTATGGGTCG 1170
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1120 GAACCGGGAAGGCAAATGATATCGGTTGCTGGGTCGACCCGGTTAGGGATTTACGGGTCT 1179
Query 1171 GATTTTGGGTGGGGAAAACCGGTTAAGGTAGAGATTGTGACAATTGATAAGGACGGTTCG 1230
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||
Sbjct 1180 GATTTTGGGTGGGGAAAACCGGTCAAGGTAGAGATTGTGACGATTGATAAGGATGCTTCG 1239
Query 1231 GTTTCATTGTCGGAGAGTGGAGATGGAAGTGGTGGTCTTGAGATTGG-GCTTTGTTTGAA 1289
|||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||
Sbjct 1240 GTTTCATTGTCGGAGAGTGGAGATGGAAGTGGTGGTGTTGAGGTTGGTG-TTTGTTTGAA 1298
Query 1290 GAAAGATGACGTGGAACGTTTTAGTTCGTTATTTTC--TCGGGGGTTGAAATAA 1341
||||||||| |||||||||||| |||| ||||| || ||||| ||| |||||
Sbjct 1299 GAAAGATGATGTGGAACGTTTTGGTTCATTATTCTCCATCGGG--TTGGAATAA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5