BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484718
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30210.1 | Symbols: ATMYB121, MYB121 | myb domain protein 12... 1565 0.0
AT5G54230.1 | Symbols: MYB49, AtMYB49 | myb domain protein 49 |... 89.8 6e-17
> AT3G30210.1 | Symbols: ATMYB121, MYB121 | myb domain protein
121 | chr3:11838363-11840502 FORWARD LENGTH=1224
Length=1224
Score = 1565 bits (847), Expect = 0.0
Identities = 1078/1186 (91%), Gaps = 29/1186 (2%)
Strand=Plus/Plus
Query 1 AAACACCCACAAAAAGTAAGAAGTGACTGTTGTCAAGCATA-AATAGAGATACACATACT 59
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2 AAACACCCACAAAAAGTAAGAAGTGACTGTTGTCAAGCATATAATAGAGATCCACATACT 61
Query 60 ATTTATATACACACGCACATGTTCAAGCAGAGACACAA-ACATAG-AAACATACACATAG 117
|||||||| |||||||||||||||||||||||||| || | |||| ||||||| ||||||
Sbjct 62 ATTTATATCCACACGCACATGTTCAAGCAGAGACA-AAGATATAGAAAACATAAACATAG 120
Query 118 AAGAGCAAATTAAGCAACAGTCTCACACAGACAGAAGTTATAGTATTGGTTTGTGTGTGA 177
||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||| ||||
Sbjct 121 AAGAGCAAATTAAGCAACAGTCTTACACAGACAGAAGTTGTAGAATTGATTTGTGAGTGA 180
Query 178 AAGGA-T-TTTTAGAATTTAACAGGTATGCTTGATTGGGGAGTTCAAGGCCATCATCAAA 235
|| | | ||| || | | |||| ||||||||||||||||||||||||| ||||||||||
Sbjct 181 AA-AACTATTTAAG-ACTGAACAAGTATGCTTGATTGGGGAGTTCAAGGTCATCATCAAA 238
Query 236 AGCATGATCATGATCTTTATCAACAACAACATCAACAACAAGGATGTAGAAAGGGACCAT 295
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 AGCATGATCATGATATTTATCAACAACAACATCAACAACAAGGATGTAGGAAGGGACCAT 298
Query 296 GGACACTTGAAGAAGATAAGCTTCTGGCGGAGTATGTTACTTCGCATGGTGAAGGAAGAT 355
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 299 GGACACTTGAAGAAGACAAGCTTCTCGCAGAGTATGTTACTTCGCATGGTGAAGGAAGAT 358
Query 356 GGAGCACTGTTGCTAAGTGTGCAGGTTTGAAAAGAAGTGGTAAAAGCTGTAGACTAAGGT 415
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 359 GGAGCACTGTAGCTAAGTGTGCAGGGTTGAATAGAAGTGGTAAAAGCTGTAGACTAAGGT 418
Query 416 GGGTGAACTACTTGAGGCCAGGGCTTAAGAGAGGACAAATCACTCCTCAAGAAGAAGGAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGTGAACTACTTGAGGCCAGGGCTTAAGAGAGGACAAATCACTCCTCAAGAAGAAGGAA 478
Query 476 TCATCCTTGAACTTCATTCCCTTTGGGGTAACAAGTGGTCTACAATCGCAAGATATTTAC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCATCCTTGAACTTCATTCCCTTTGGGGTAACAAGTGGTCTACAATCGCAAGATATTTAC 538
Query 536 CAGGTCGAACAGATAATGAAATCAAAAACTATTGGAGAACACATTACAAGaaaaaagaaa 595
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 539 CAGGACGAACCGATAATGAAATAAAAAACTACTGGAGAACACATTACAAGAAAAACCAAA 598
Query 596 aaaT-TTCTTCGAAGCAAGACAAAGTCAAAAGATCTCTATCCCGGAAACAACAA-A--TG 651
|| | ||||||||||||||||||||| |||| |||||||||||||||||||||| | ||
Sbjct 599 AA-TCTTCTTCGAAGCAAGACAAAGTAAAAAAATCTCTATCCCGGAAACAACAACAAGTG 657
Query 652 GATCTTAAACCGCAAC-A-A--CA------GA-A-TCATCAGTCTCAACTAGTGCCCCAA 699
||||||||||| |||| | | || || | |||||||||||| |||||| |||||
Sbjct 658 GATCTTAAACCACAACCACAAGCACAATCTGAGAATCATCAGTCTCAGCTAGTGTCCCAA 717
Query 700 GACCACATGAATATCGACAACGATCAAAACATAGAGTCCGCTTTGTATTACCCGGCTAGT 759
|| ||||||||||||||||||||||| ||||||| || | |||||||||||| | |||
Sbjct 718 GATCACATGAATATCGACAACGATCATAACATAGCTTCATCCTTGTATTACCCGACAAGT 777
Query 760 GTCTTCGATGACCAATTTTCTATGCCTCAAATTGTTGCAACAACCTCATCCGACCACTCT 819
|||||||||||| |||| | ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 778 GTCTTCGATGACAAATTATATATGCCTCAAAGTGTAGCAACAACCTCATCCGACCACTCT 837
Query 820 ATGATCGATGAAGGTCACTTGTGGGGCAGCTTGTGGAATCTAGATGATGATGATCCACAC 879
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 838 ATGATCGATGAAGGTCACTTGTGGGGCAGCTTGTGGAATCTAGACGAGGATGATCCGCAT 897
Query 880 GG-TTTCGGTGGTGGCTCAGGACAGAGAACAGCTGAAAATATTGCTGAGAAGTTTCCAGG 938
| ||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 898 AGCTTT-GGTGGTGGCTCAGGACAGGGAACAGCTGCGGATATTGATGAGAAGTTTCCAGA 956
Query 939 CAGCGGAATTGAGGCCCCATCGTGTGGCTCAGGGGATTATAGTTATACTGGCTTTTACAT 998
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 957 CAGCGGAATTGAGGCCCCGTCGTGTGGCTCAGGGGATTATAGTTATACTGGAGTTTACAT 1016
Query 999 GGGAGGCTATATTTTTTAATTAGTATGCTCGAAGATATCAAGAAGTTGTGTCTTCGTATT 1058
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGGAGGCTATATTTTTTGATTAGTATGCTCGAAGATATCAAGAAGTTGTGTCTTCGTAG- 1075
Query 1059 GTTGATAGAAAAATTAAAAGACCTCATTGTGTATTTTCTAACTTTAATAAT-ATCTAAAA 1117
||||| | ||||||||||| ||||||||||||| ||| |||||||| || | ||||||||
Sbjct 1076 GTTGAGAAAAAAATTAAAACACCTCATTGTGTAATTTATAACTTTAGTAGTGATCTAAAA 1135
Query 1118 ATAGAACGGACTGAGGCTAATAAAATGGTTTGAAATCTATATTTCT 1163
|||| ||| |||||||||||| |||||||| ||| ||||| |||
Sbjct 1136 CTAGAGTGGAGTGAGGCTAATAAGATGGTTTGGAATATATATGTCT 1181
> AT5G54230.1 | Symbols: MYB49, AtMYB49 | myb domain protein 49
| chr5:22016250-22017933 REVERSE LENGTH=1155
Length=1155
Score = 89.8 bits (48), Expect = 6e-17
Identities = 112/142 (79%), Gaps = 8/142 (6%)
Strand=Plus/Plus
Query 442 AAGAGAGGACAAATCACTCCTCAAGAAGAAGGAATCATCCTTGAACTTCATTC-CCTT-T 499
||||||||| | || ||| |||||| |||| || |||| || ||||||| || ||| |
Sbjct 284 AAGAGAGGAGAGTTCTCTCTTCAAGAGGAAGAAACCATCATTCAACTTCA-TCGTCTTCT 342
Query 500 GGGGTAACAAGTGGTCTACAATCGCAAGAT-ATTTACCAGGTCGAACAGATAATGAAATC 558
|| ||||| ||||| |||| || | | | |||||||| |||||||||||||||||
Sbjct 343 -TGGAAACAAATGGTCCGCAATTGCTA-TTCACTTACCAGGAAGAACAGATAATGAAATC 400
Query 559 AAAAACTATTGGAGA-ACACAT 579
||||||||||||| | ||||||
Sbjct 401 AAAAACTATTGGA-ACACACAT 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5