BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484728
Length=2368
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30300.1 | Symbols: | O-fucosyltransferase family protein |... 3661 0.0
> AT3G30300.1 | Symbols: | O-fucosyltransferase family protein
| chr3:11921198-11924574 REVERSE LENGTH=2486
Length=2486
Score = 3661 bits (1982), Expect = 0.0
Identities = 2255/2386 (95%), Gaps = 21/2386 (1%)
Strand=Plus/Plus
Query 1 CACCGATCTACTTCACCAGACATGTTCTCACACGTG--tc-tc-ctctctctctctctTC 56
|||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||
Sbjct 101 CACCGATCTACTTCTCCAGACATGTTCTCACACGTGTCTCTTCTCTCTCTCTCTCTCTTC 160
Query 57 CGATTCAACTTTTCTTCTA--CTCACTCTAGTCTCTGTTATGTCCTCCATTAGTAAAAGA 114
||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 161 CGATTCAACTTTTCTTCTACTCTCACTTTAGTCTCTGTTATGTCCTCCATTAGCAAAAGA 220
Query 115 ACCAATTCACTTCAGTTCACTTTCACATC-T---GTAGAGATGAAGGGAGAAGGTAAAGT 170
|||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 221 ACCACTTCACTTCACTTCACTTTCACATCTTGAAGTAGAGATGAAGGGAGAAGGTAAAGT 280
Query 171 CTTCTTGAAGTCGCGTATGAAATGGATTGgtcttcttggtctct-ttctgtctgctttct 229
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 281 CTTCTTGAAGTCGCGTATGAAATGGATTGGTCTTCTTGGTCT-TGTTCTCTCTGCTTTCT 339
Query 230 ctcttcttgtccattttcttctcGCCGGATTCACAGATGACTCAATCTCCGATTACTCTA 289
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 340 CTCTTCTTGTCCATTTTCTTCTCGCTGGATTCACAGATGACTCAATCTCCGATTACTCTA 399
Query 290 TTCCTGTTACTATCTTCTCTTGGAGACC-AGTCTTCGACAATCCCAGATTTGCCCGACAT 348
| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 400 TCCCTGTCACTATCTTCTCTTGGAGACCTA-TCTTCGACAATCCCAGATTTGCCCGTCAT 458
Query 349 ACACCATTGTATCGAAGACTTTGGGGACCAACAAGACATGTGGAGACATTACTTCCTGAT 408
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 459 ACACCATTGTATAGAAGACTTTGGGGACCAACAAGACATGTAGAGACATTACTTCCTGAT 518
Query 409 GCTAATCCTAGAGGTTTCCATTCAGATCCTCCGGCAAGGACAAACGGTTTTGTTTTTGTT 468
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 519 GCTAATCCTAGAGGTTTTCATTCAGATCCTCCTGCAAGGACAAATGGTTTTGTTTTTGTT 578
Query 469 AGAATACAAGGTGGTTTCCATGAGATTAGAAATTCGATTCCTGATGTTGTAGCAGTTTCT 528
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 579 AGAATACAAGGTGGTTTCCATGAGATTAGAAACTCGATTCCTGATGTTGTAGCTGTGTCT 638
Query 529 CGGCTTCTTAACGCCACTTTGGTGATTCCTGAGATTCAATCAACAACTAGCAGCAAAGGG 588
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 639 CGGCTTCTTAACGCCACTTTGGTGATTCCTGAGATACAATCAACAACTAGTAGCAAAGGG 698
Query 589 ATTAGTTCACAGTTCAAGAGCTTTGCGTATTTGTACAACGAAGAACACTTCATGTCTTCA 648
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 699 ATTAGTTCACAGTTCAAGAGCTTTGCGTATTTGTACAATGAAGAACACTTCATGGCTACA 758
Query 649 ATTGCAAATGATGTTAGAGTTGTTAAAACTCTTCCCAAGAATCTCAAATGGGCTAGAAGA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 ATTGCAAATGATGTTAGAGTTGTTAAAACTCTTCCCAAGAATCTCAAATGGGCTAGAAGA 818
Query 709 AAGAAACAAATTCCTTCTTTTAAAGTCTCTTACGGATCTTCGCCTTATTACTACTTGCAT 768
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 819 AAGAAACAGATTCCTTCTTTTAAAGTCTCTTACGGATCTTCACCTTATTACTACTTACAT 878
Query 769 CATGTTCTACCTGTTCTCATTAAGCACTCGGTTGTTGAACTCGTTGTCCCTCACGGTGGA 828
||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||
Sbjct 879 CATGTTCTACCTGTTCTTATTAAACACTCGGTCGTTGAACTAGTTGTCCCGCACGGTGGA 938
Query 829 TGCTTACAAGCTATACTTCCAAGTGATCTTGAAGAATATCAGAGATTACGGTGTAGAGTT 888
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 939 TGCTTACAAGCTATACTTCCTAGTGATCTTGAAGAATATCAGAGGTTACGGTGTAGAGTT 998
Query 889 GCGTTT-CACGCCTTACAATTTAGGAAAGAGGTTCAAGAACTTTCCACTAAAGTATTGCA 947
|| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 999 GC-TTTCCACGGTTTACAATTTAGGAAAGAGGTTCAAGAACTTTCCACTAAAGTATTACA 1057
Query 948 AAGGCTGAGACCTTTAGGACGACCTTTCATAGCCTATGATCCAGGGATGACAAGAGAAGC 1007
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1058 AAGGCTGAGACCGTTAGGACGACCTTTCATAGCTTATGATCCAGGGATGACAAGAGAAGC 1117
Query 1008 TTTGGCCTACCATGGTTGTGCTGAACTGTTCCAGGATGTTCATACCGAGCTGATTCAACA 1067
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TTTGGCCTATCATGGTTGTGCTGAACTGTTCCAGGATGTTCATACCGAGCTGATTCAACA 1177
Query 1068 TAAACGAGCTTGGATGATAAAACGTGGGATTGTCAAAGGGAAGCTCTCTGTAGACTCAAC 1127
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1178 TAAACGAGCTTGGATGATAAAACGTGGTATTGTCAAAGGGAAGCTCTCTGTAGACTCAGC 1237
Query 1128 CGAGCAACGCCTTGCGGGCTTATGTCCTCTAATGCCAGAAGAAGTTGGTATTCTTCTAAG 1187
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| || |
Sbjct 1238 CGAGCAACGCCTCGCGGGGTTATGTCCTCTTATGCCAGAAGAAGTTGGTATTCTTTTACG 1297
Query 1188 AGCTTATGGATACGCATGGGACACAATCATATATGTCGCTGGAGGAGAGGTTTTTGGCGG 1247
||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1298 AGCTTATGGATACTCATGGGATACAATCATATATGTCGCTGGGGGAGAGGTTTTTGGTGG 1357
Query 1248 GCAGAGAACGTTAATTCCTTTACATGGCATGTTTGAGAATGTCGTTGACCGTACTTCTCT 1307
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1358 GCAGAGAACGTTAATTCCTTTACATGGTATGTTTGAGAATGTCGTTGACCGTACTTCTCT 1417
Query 1308 TAGTACTAGCTGGGAGCTTGCTAAGATGTATGGGCGTGAGGCAAAACATAATGATATCAA 1367
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1418 AAGTACTAGCTGGGAGCTTGCTAAAATGTATGGGCGTGAGGCAAAGCATAATGATATCAA 1477
Query 1368 GAAAATGACACCTCCTTCGATTGAGGAAGAAACGAAACATGATTCATTGAAAAGCACAAG 1427
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1478 GAAAATGACACCTCCTTCGATCGAGGTAGAAACGAAACATGATTCATTGAAAAGCACAAG 1537
Query 1428 ACAAAGGCCTCAACCACTTCCGCCTCCACCGGCTAGACCAAAGTACTACAACATTGAAGG 1487
|||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 1538 ACAAAGACCTCAACCGCTTCCACCTCCACCAGCTAGACCAAAGTACTACAACATCGAAGG 1597
Query 1488 TTGGTGGGGTTGGGTAGCTGAGAGTGACAATGAGCCCGAAAGCACGGTTATTGAGCTGAG 1547
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1598 TTGGTGGGGTTGGGTAGCCGAGAGTGACAACGAGCCCGAAAGCACGGTTATTGAGTTGAG 1657
Query 1548 AACTAATGCTCACAAGCTGTTGTGGGAAGCAATTGATTATGTTGTTAGCGTGGAAGCAGA 1607
||||||||| || ||| ||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1658 AACTAATGCCCATAAGTTGTTGTGGGAAGCGATAGATTACGTTGTTAGCGTGGAAGCAGA 1717
Query 1608 TGTATTTATCTCGGGATTTGATCACGATGGGAAAGGACATCCGAGTTTTGCTAGTTTGGT 1667
||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1718 TGTGTTTATCTCGGGTTTTGATCGCGATGGGAAAGGACATCCGAGTTTCGCTAGTTTGGT 1777
Query 1668 GATGGGTCACCGGCTTTATCAGTCTGCTTCTGCTAAGACATTTAGACCAGACAGGAAACA 1727
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1778 CATGGGACACCGGCTTTATCAGTCTGCTTCTGCTAAAACATTTAGACCAGACAGGAAACA 1837
Query 1728 AATTGCAATGCTTTTGGAAGAGATCCGAGACCATATGTACGAGGCGAATCACACTTGGAT 1787
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1838 AATTGCAATGCTTTTGGAAGAGATTCGAGACCATATGTACGAGGCGAATCACACTTGGAT 1897
Query 1788 AACATCAGTTAGGAAGCTACTCAAGAGAAGCATACTCGAGGGTCTAATCGAATCTTCTAA 1847
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1898 AACATCAGTTAGGAAGCTACTAAAGAGAAGCATACTCGAGGGTCTAATGGAATCTTCCAA 1957
Query 1848 AAAATCAAAAGCCTTTAGTTTTCTTTCGCATCCTGTACCCGAATGTTCTTGCATAACGCG 1907
|| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1958 AAGATCAAAAGCATTTAGTTTTCTTTCCCATCCTGTACCCGAATGTTCTTGCATTACGCG 2017
Query 1908 GGCCCATCCGGTTTCAAACGCCTCAAATCTTGGAGTGACACACCGTTGTCCGCAATGGAT 1967
|||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |
Sbjct 2018 AACCCATCCGGTTTCAAATGCCACAAATCTTGGGGTGACACACCGTTGTCCGCAATGGGT 2077
Query 1968 GGATGGCATTGTAAACAAAAGATCAAAGGATTATAAGAACGCAGAGAAAGAAGAGGATCT 2027
|||||| ||||| | |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 2078 GGATGGTGCTGTAAGCGAAAGATTAAAGGAGTATAAGAACGCAGAGAAAGAAGAGGATCT 2137
Query 2028 TGATGAAGAGGACTTGTCTTCTTCAGGATTGTTCTTTGGTCACAAGGAAAGTGGAGGGAA 2087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 TGATGAAGAGGACTTGTCTTCTTCAGGATTGTTCTTTGGTCACAAGGAAAGTGGAGGGAA 2197
Query 2088 CAATAATGGTAACAATGAGACTGTAAATTCTGAAGCTAACAACAAGGAAGAAGGCCAGCT 2147
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 2198 TAATAATGGTAACAATGAGACTGTAAATTCCGAAGCTAACAATAAGGAAGAAGGTCAGCT 2257
Query 2148 TGAAGATCAAGAAGAGCTTGAAGGTGGCGAAAGATAAGGCTTGTGATTGAAGATGCAACA 2207
||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2258 TGAAGATCAAGAAGAACTTGAAGGCAGCGAAAGATAAGGCTTGTGGTTGAAGATGCAACA 2317
Query 2208 ATGAGTAAGTCGCAGGTAGATCTAACCTTTTCTCAAAAATAGTTTATAGCCTGGTTATTA 2267
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2318 ATGAGCAAGTCGCAGATAGATCTAACCTTTTCTCAAAAATAGTTTATAGCCTGGTTATTA 2377
Query 2268 CTTATTAGGTTGTGTATTAGAATC-Gt-ttttttttttt-A--ATCAACTTTACAACAGT 2322
||||||||||||||||||||||| || ||||||||||| | ||||| |||||||||||
Sbjct 2378 CTTATTAGGTTGTGTATTAGAATATGTCTTTTTTTTTTTGATGATCAATTTTACAACAGT 2437
Query 2323 TTAGTGATTTTTAAGAACATAATTCTATGGTACTATATATTTTTGT 2368
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438 TTAGTGATTTTTAAGAACATAATTCTATGGTACTATATATTTTTGT 2483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117569676390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5