BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484733
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29810.1 | Symbols: COBL2 | COBRA-like protein 2 precursor |... 2141 0.0
> AT3G29810.1 | Symbols: COBL2 | COBRA-like protein 2 precursor
| chr3:11728113-11730239 FORWARD LENGTH=1506
Length=1506
Score = 2141 bits (1159), Expect = 0.0
Identities = 1328/1409 (94%), Gaps = 14/1409 (1%)
Strand=Plus/Plus
Query 1 CACATCTTCGAGAAGTTTCCGCCGGCGGGAGAGATCAAAGACAACTGTTGATCAGAAATC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 27 CACATCTTCGAGAAGTTTCCGCCGGCGGGAGAGATCAAAGACAACTGCTGATCAGAAATC 86
Query 61 AGATATCAGAGATATGAACATTCTCTTCTCTAGATTCTCCATTTTGCTTCTGTTTCTCTG 120
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 87 AGAGATCAGAGATATGAACATTCTCTTCTCCAGATTCTCCTTTTTGCTTCTGTTTCTCTG 146
Query 121 TTCTTGGACCAG------TTTCACCACAACAGAGGCTTATGATGCACTTGATCCA-ACTG 173
|||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 147 TTCTTGGACCAGTTTCACTTTCACCACAACAGAAGCTTATGATGCACTTGATCCATA-TG 205
Query 174 GAAACATTACTATAAAATGGGATATTATAAGCTGGACTCCTGATGGTTATTTGGCTGTTG 233
|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 206 GAAACATTACTATAAAATGGGATATTATGAGCTGGACTGGTGATGGTTATGTGGCTGTTG 265
Query 234 TAACAATCTTTAATTTCCAACAATACCGTCATATTGAGGCGCCCGGGTGGCAATTAGGAT 293
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 266 TAACAATCTTTAATTTCCAACAATACCGTCACATTGAGGCGCCGGGGTGGCAATTAGGAT 325
Query 294 GGAGTTGGTTGAAGAAGGAAGTGATATGGAGTATGGTTGGTGGGCAAGCAACAGAACAAG 353
|||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 326 GGAGTTGGATGAAGAAGGAAGTAATTTGGAGTATGGTTGGTGGTCAAGCAACAGAACAAG 385
Query 354 GAGATTGTTCTAAGTTTAAGGGTAACATTCCTCATTGCTGCAAGAAAACCCCGGCCATCG 413
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 386 GAGATTGTTCTAAGTTTAAGGGTAACATTCCTCATTGCTGCAAGAAAACTCCGGCTATCG 445
Query 414 TTGATTTGTTACCGGGAACTCCTTATAACCAACAGATATCCAACTGTTGTAGAGGCGGTG 473
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 446 TTGATTTGTTACCGGGAACTCCTTATAACCAACAGATATCAAACTGTTGTAGAGGCGGTG 505
Query 474 TGATTAGCGCGTGGGCACAAGACCCTGCAACTGCGATTTCTTCGTTTCAGATTAGTGTTG 533
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 506 TGATTAGCGCGTGGGCGCAAGACCCCGCAACCGCGATTTCTTCGTTTCAGATTAGTGTTG 565
Query 534 GTCAATCTGGAACAACTAATACTACGGTTAGAGCACCTAGGAACATCACTTTGAAGGCGC 593
| || |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 566 GCCAGTCTGGAACAACTAATACTACGGTTAGAGCACCTAGGAATATAACTTTGAAGGCTC 625
Query 594 CAGGACCTGGTTACACTTGCGGGCCTGCAAAACTCGTTAAGCCTAGTAAATTCATTTCTG 653
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 626 CAGGACCTGGTTACACTTGCGGGCCTGCAAAACTCGTTAAGCCGAGTAGATTCATTTCCG 685
Query 654 CAGATGAACGAAGAAAGACTCAGTCCTTGCTGACATGGAACATTACGTGCACGTATTCGC 713
| ||| ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct 686 CGGATAAACGAAGAAAGACTCAGTCTTTGCTTACATGGAACATTACTTGCACATATTCGC 745
Query 714 AGTTTCTAGCACGGAAAACTCCGACTTGTTGTGTCTCACTCTCATCCTTCTACAATGAAA 773
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 746 AGTTTCTAGCACGGAAAACTCCGACTTGTTGTGTCTCACTCTCAGCCTTCTACAATGAAA 805
Query 774 CTATAATACCATGCCCAACTTGTTCTTGTGGATGTCAAAATAGTTCTCAAGCTGGTACAT 833
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CTATAGTACCATGTCCAACTTGTTCTTGTGGATGTCAAAATAGTTCTCAAGCTGGTACAT 865
Query 834 GTGTTGACCCGAAAATAGCTTCGGTTGTACCAGC-TTCGGGGAAGAACAACCTTGAACCG 892
|||||||||| ||||||||||| || |||||||| || ||| ||||||||||| |||||
Sbjct 866 GTGTTGACCCTAAAATAGCTTCAGTAGTACCAGCCTTAGGG-AAGAACAACCTCGAACCT 924
Query 893 CTCTTGCAATGTACGCAACATATGTGTCCCATCCGAGTTCATTGGCATGTAAAAACTAAC 952
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 925 CTCTTGCAATGTACGCAACATATGTGTCCCATTCGAGTTCATTGGCATGTAAAAACTAGC 984
Query 953 TACAAAGAGTACTGGAGAGTGAAGGTCGCAATCACAAACTTTAACTACAATATGAACTAC 1012
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 985 TACAAAGAGTACTGGAGAGTGAAGGTTGCCATCACAAACTTTAACTACAATATGAACTAC 1044
Query 1013 TCGCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTCAGCTTTTCAGC 1072
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1045 TCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAG- 1103
Query 1073 TTT-AACTACAAACCGCTTAATCCTTACGCAAACATAAATGATACGGCCATGCTATGGGG 1131
||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1104 TTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAATGACACGGCCATGCTATGGGG 1163
Query 1132 AATCAAGTTCTACAATGATTTTTTGAGCCAAGCTGGTCCAGTAGGCAATGTACAATCAGA 1191
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1164 AATCAAGTTCTACAATGATTTTTTAAGCCAAGCTGGTCCAGTAGGCAATGTACAGTCAGA 1223
Query 1192 GCTTCTCTTCCAAAAGAACCCGTCGGAGTTCACATTCGAGAAAGGATGGGCGTTTCCGAG 1251
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1224 GCTTCTCTTCCAAAAGAACCCATTGGAGTTCACATTCGAGAAAGGATGGGCGTTTCCGAG 1283
Query 1252 GCGCATTTACTTCAACGGTGATAACTGCGTTATGCCACCTCCAGACTCTTATCCATGGCT 1311
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 GCGCATATACTTCAACGGTGATAACTGCGTTATGCCACCTCCAGACTCTTATCCATGGCT 1343
Query 1312 TCCGAACGCTACTCCAAACCAT-GCAGCCTCGCCATTTGTTATACTTCTCATCACTTTCT 1370
||| ||||||| ||||||| || ||| ||||||||||||| |||||||||||||||||||
Sbjct 1344 TCCAAACGCTAGTCCAAAC-ATTGCAACCTCGCCATTTGTCATACTTCTCATCACTTTCT 1402
Query 1371 TTTTTGTTTTAATTCTTATGTAAAGGGAT 1399
| | |||||| ||||||||||||| ||||
Sbjct 1403 TATCTGTTTTGATTCTTATGTAAATGGAT 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71334974445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5