BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484734
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00770.1 | Symbols: ORF100B | hypothetical protein | chrM:22... 403 3e-112
AT2G07685.1 | Symbols: | transposable element gene | chr2:3307... 403 3e-112
> ATMG00770.1 | Symbols: ORF100B | hypothetical protein | chrM:222687-222989
REVERSE LENGTH=303
Length=303
Score = 403 bits (218), Expect = 3e-112
Identities = 229/234 (98%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 1 CCATGGAGGGTTCTCTTGAGTCTTATCCTTTTCCTTCCAATATCAATATTACTAGTTGTG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CCATGGAGGGTTCTCTTAAGTCTTATCCTTTTCCTTCCAATATCAATATTACTAGTTGTG 130
Query 61 TCTCCCATTAAACTCAACGATCGGAACTATCTTCTATACGACGAAGGAAGGGTGCGATTG 120
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 131 TCT-CCATTAAACTCAACGATCGGAACTATCTTTTATACGACGAAGGAAGGGTGCGATTG 189
Query 121 AGTCCGCTGAACTTGGGCGAGAGATGTGACTTCGTTCCTCTCCTTTCAGTCGAGTTATTT 180
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 190 AGTCTGCTGAACTTGGGCGAGAGATGTGACTTCGTTCCTTTCCTTTCAGTCGAGTTATTT 249
Query 181 AAACCTCTCCAGAGCTCTGGTGTCTACGAGAAGCTTCATGAGTCAAACAATTGA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AAACCTCTCCAGAGCTCTGGTGTCTACGAGAAGCTTCATGAGTCAAACAATTGA 303
> AT2G07685.1 | Symbols: | transposable element gene | chr2:3307942-3309231
FORWARD LENGTH=1290
Length=1290
Score = 403 bits (218), Expect = 3e-112
Identities = 229/234 (98%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 1 CCATGGAGGGTTCTCTTGAGTCTTATCCTTTTCCTTCCAATATCAATATTACTAGTTGTG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CCATGGAGGGTTCTCTTAAGTCTTATCCTTTTCCTTCCAATATCAATATTACTAGTTGTG 130
Query 61 TCTCCCATTAAACTCAACGATCGGAACTATCTTCTATACGACGAAGGAAGGGTGCGATTG 120
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 131 TCT-CCATTAAACTCAACGATCGGAACTATCTTTTATACGACGAAGGAAGGGTGCGATTG 189
Query 121 AGTCCGCTGAACTTGGGCGAGAGATGTGACTTCGTTCCTCTCCTTTCAGTCGAGTTATTT 180
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 190 AGTCTGCTGAACTTGGGCGAGAGATGTGACTTCGTTCCTTTCCTTTCAGTCGAGTTATTT 249
Query 181 AAACCTCTCCAGAGCTCTGGTGTCTACGAGAAGCTTCATGAGTCAAACAATTGA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AAACCTCTCCAGAGCTCTGGTGTCTACGAGAAGCTTCATGAGTCAAACAATTGA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5