BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484736
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00760.1 | Symbols: ORF109B | hypothetical protein | chrM:22... 601 2e-171
AT2G07685.1 | Symbols: | transposable element gene | chr2:3307... 601 2e-171
> ATMG00760.1 | Symbols: ORF109B | hypothetical protein | chrM:221700-222029
REVERSE LENGTH=330
Length=330
Score = 601 bits (325), Expect = 2e-171
Identities = 327/328 (99%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 1 ATGCTTAGAAGTGGAAAAGAGCTTGAGGAAGTTGTGAGAGATGATAAGGAAGAGGAGCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTTAGAAGTGGAAAAGAGCTTGAGGAAGTTGTGAGAGATGATAAGGAAGAGGAGCAA 60
Query 61 GTTGTTGTGAGAAAGGCTAAACAGATCGTCAACTTTCCGTTGCTTGGCATGCTCTCATCA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GTTGTTGTGAGAAAGGCTAAACAGATCGTCAACTTTCCCTTGCTTGGCATGCTCTCATCA 120
Query 121 GCAAGGTATGGCTTAAGGCGCTGGCCATTCACCGTGAAGTGTTCACCATTGACATCCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAAGGTATGGCTTAAGGCGCTGGCCATTCACCGTGAAGTGTTCACCATTGACATCCCAA 180
Query 181 AGCACTACCGCTCCATACGGTTTCACTTCCTTTATGCGAAAGGGTAAAAAACATCTAGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCACTACCGCTCCATACGGTTTCACTTCCTTTATGCGAAAGGGTAAAAAACATCTAGAT 240
Query 241 CTCAACTTTCCTGGAAATAACTTGAGTCTAGAGTTGAGGAGCAGCACTTGGTCATTTACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCAACTTTCCTGGAAATAACTTGAGTCTAGAGTTGAGGAGCAGCACTTGGTCATTTACC 300
Query 301 TTGAACTCCCTTGGTAAGATCTTCTTAT 328
||||||||||||||||||||||||||||
Sbjct 301 TTGAACTCCCTTGGTAAGATCTTCTTAT 328
> AT2G07685.1 | Symbols: | transposable element gene | chr2:3307942-3309231
FORWARD LENGTH=1290
Length=1290
Score = 601 bits (325), Expect = 2e-171
Identities = 327/328 (99%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 1 ATGCTTAGAAGTGGAAAAGAGCTTGAGGAAGTTGTGAGAGATGATAAGGAAGAGGAGCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATGCTTAGAAGTGGAAAAGAGCTTGAGGAAGTTGTGAGAGATGATAAGGAAGAGGAGCAA 1020
Query 61 GTTGTTGTGAGAAAGGCTAAACAGATCGTCAACTTTCCGTTGCTTGGCATGCTCTCATCA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 GTTGTTGTGAGAAAGGCTAAACAGATCGTCAACTTTCCCTTGCTTGGCATGCTCTCATCA 1080
Query 121 GCAAGGTATGGCTTAAGGCGCTGGCCATTCACCGTGAAGTGTTCACCATTGACATCCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCAAGGTATGGCTTAAGGCGCTGGCCATTCACCGTGAAGTGTTCACCATTGACATCCCAA 1140
Query 181 AGCACTACCGCTCCATACGGTTTCACTTCCTTTATGCGAAAGGGTAAAAAACATCTAGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGCACTACCGCTCCATACGGTTTCACTTCCTTTATGCGAAAGGGTAAAAAACATCTAGAT 1200
Query 241 CTCAACTTTCCTGGAAATAACTTGAGTCTAGAGTTGAGGAGCAGCACTTGGTCATTTACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTCAACTTTCCTGGAAATAACTTGAGTCTAGAGTTGAGGAGCAGCACTTGGTCATTTACC 1260
Query 301 TTGAACTCCCTTGGTAAGATCTTCTTAT 328
||||||||||||||||||||||||||||
Sbjct 1261 TTGAACTCCCTTGGTAAGATCTTCTTAT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15281395696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5