BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484738
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07687.1 | Symbols: | Cytochrome c oxidase, subunit III | c... 1783 0.0
ATMG00730.1 | Symbols: COX3 | cytochrome c oxidase subunit 3 | ... 1441 0.0
> AT2G07687.1 | Symbols: | Cytochrome c oxidase, subunit III |
chr2:3311654-3312651 REVERSE LENGTH=998
Length=998
Score = 1783 bits (965), Expect = 0.0
Identities = 984/993 (99%), Gaps = 1/993 (0%)
Strand=Plus/Plus
Query 1 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 60
Query 61 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 120
Query 121 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTCTCCTATATACCATGTTCGTATGG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTATCCTATATACCATGTTCGTATGG 180
Query 181 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 240
Query 241 GGACCTCGATATGGTTTTATTCTGTTCATCGTATCGGAGGTTATGTTCttttttgctttt 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGACCTCGATATGGTTCTATTCTGTTCATCGTATCGGAGGTTATGTTCTTTTTTGCTTTT 300
Query 301 ttttGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTTGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 360
Query 361 CCAAAAGGGATTGGGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAAAAGGGATTGAGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 420
Query 421 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAAGAAAAA 480
Query 481 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 540
Query 541 GGAATGGAATATTATCAAGCACCCTTTACTATTTCGGATAGTATTTATGGTTCTACCTTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTT 600
Query 601 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 660
Query 661 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 720
Query 721 GCTGCATGGTACTGGCATTTTGTAGACGTGGTTTGGTTATTCCTATTTGTCTCTATCTAT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GCTGCATGGTACTGGCATTTTGTAGACGTAGTTTGGTTATTCCTATTTGTCTCTATCTAT 780
Query 781 TGGTGGGGAGGTATATGAAGGAACGAAAGAGTGGATTAAAAAATGAAAGCTCGAAGACAA 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TGGTGGGGAGGTATATGAAGGAACGAAAGAGTGGATTACAAAATGAAAGCTCGAAGACAA 840
Query 841 AGAGAACCGGGCTTTTCCAAAGAATTACTGCAGCTTTCCCACTCCCTTTGATTATCATAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAGAACCGGGCTTTTCCAAAGAATTACTGCAGCTTTCCCACTCCCTTTGATTATCATAT 900
Query 901 ACAATAAAGTCTCTTCCACTTTC-TACCAAATCTCTCTTTATTCTGGCACATAAATGAAG 959
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 901 ACAATAAAGTCTCTTCCACTTTCCTACCAAATCTATCTTTATTCTGGCACATAAATGAAG 960
Query 960 GAATCGAAGAGATTATGGCAGATCATGTTCACC 992
|||||||||||||||||||||||||||||||||
Sbjct 961 GAATCGAAGAGATTATGGCAGATCATGTTCACC 993
> ATMG00730.1 | Symbols: COX3 | cytochrome c oxidase subunit 3
| chrM:217631-219077 FORWARD LENGTH=1447
Length=1447
Score = 1441 bits (780), Expect = 0.0
Identities = 792/798 (99%), Gaps = 0/798 (0%)
Strand=Plus/Plus
Query 1 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 709
Query 61 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 769
Query 121 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTCTCCTATATACCATGTTCGTATGG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 770 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTATCCTATATACCATGTTCGTATGG 829
Query 181 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 889
Query 241 GGACCTCGATATGGTTTTATTCTGTTCATCGTATCGGAGGTTATGTTCttttttgctttt 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGACCTCGATATGGTTCTATTCTGTTCATCGTATCGGAGGTTATGTTCTTTTTTGCTTTT 949
Query 301 ttttGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTTTGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 1009
Query 361 CCAAAAGGGATTGGGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CCAAAAGGGATTGAGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 1069
Query 421 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1070 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAAGAAAAA 1129
Query 481 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 1189
Query 541 GGAATGGAATATTATCAAGCACCCTTTACTATTTCGGATAGTATTTATGGTTCTACCTTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1190 GGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTT 1249
Query 601 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 1309
Query 661 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 1369
Query 721 GCTGCATGGTACTGGCATTTTGTAGACGTGGTTTGGTTATTCCTATTTGTCTCTATCTAT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1370 GCTGCATGGTACTGGCATTTTGTAGACGTAGTTTGGTTATTCCTATTTGTCTCTATCTAT 1429
Query 781 TGGTGGGGAGGTATATGA 798
||||||||||||||||||
Sbjct 1430 TGGTGGGGAGGTATATGA 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5