BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484743
Length=457
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07671.1 | Symbols: | ATP synthase subunit C family protein... 725 0.0
ATMG01080.1 | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9... 449 8e-126
AT2G07811.1 | Symbols: | pseudogene of mitochondrial protein |... 387 7e-107
ATMG00040.1 | Symbols: ORF315 | ATP synthase subunit C family p... 270 7e-72
> AT2G07671.1 | Symbols: | ATP synthase subunit C family protein
| chr2:3251665-3252113 REVERSE LENGTH=449
Length=449
Score = 725 bits (392), Expect = 0.0
Identities = 437/457 (96%), Gaps = 10/457 (2%)
Strand=Plus/Plus
Query 1 ATGACAAAGCGTGAGTAGAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATTAATAGGT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGACAAAGCGTGAGTATAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATCAATAGGT 60
Query 61 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTCTTCAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGT 120
Query 121 TCTTTGATCCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATTATTTGGTTATGCC 180
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TCTTTGATTCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCC 180
Query 181 ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG 240
Query 241 ATCTTATTCGTATTCTGATCGAAGAAAGAAGGTTTCCATTCAGTCTCATAAAGCAAGCAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTTATTCGTATTCTGATCGAAGAAAGAAGGTTTCCATTCAGTCTCATAAAGCAAGCAC 300
Query 301 CTCTTTCACATAAGAAAGTGGAGGCAGGCTTGTGGGGATACGATCTAAAATGATTCCACA 360
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 301 CTCTTTCACATAAGAAAGTGGAGGCAGGCTTG-GGG-ATACGATCTAAAATGATTCCA-A 357
Query 361 TGAAAGAGGACCGGGCAATCGCCCTCTTGAGTAATGAAGAAGCGGGCTAGTCCCCGAAAA 420
| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 358 -G---GA---CCGGGCAATCGCCCTCTTTTTTAATGAAGAAGCGGGCTAGTCCCCGAAAA 410
Query 421 TGCCCGTTAATAAAGCAAGTTGGGGaaaaaaaTCTTC 457
||||||||||| ||||||||||||||| |||||||||
Sbjct 411 TGCCCGTTAATCAAGCAAGTTGGGGAACAAAATCTTC 447
> ATMG01080.1 | Symbols: ATP9 | mitochondrial F0-ATPase subunit
9 | chrM:278649-279152 FORWARD LENGTH=504
Length=504
Score = 449 bits (243), Expect = 8e-126
Identities = 253/258 (98%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAGCGTGAGTAGAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATTAATAGGT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 247 ATGACAAAGCGTGAGTATAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATCAATAGGT 306
Query 61 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTCTTCAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 307 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGT 366
Query 121 TCTTTGATCCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATTATTTGGTTATGCC 180
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 367 TCTTTGATTCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCC 426
Query 181 ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG 486
Query 241 ATCTTATTCGTATTCTGA 258
||||||||||||||||||
Sbjct 487 ATCTTATTCGTATTCTGA 504
> AT2G07811.1 | Symbols: | pseudogene of mitochondrial protein
| chr2:3313598-3314901 REVERSE LENGTH=1304
Length=1304
Score = 387 bits (209), Expect = 7e-107
Identities = 244/259 (94%), Gaps = 10/259 (4%)
Strand=Plus/Plus
Query 196 CTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTGATCTTATTCGTATTC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTGATCTTATTCGTATTC 958
Query 256 TGATCGAAGAAAGAAGGTTTCCATTCAGTCTCATAAAGCAAGCACCTCTTTCACATAAGA 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGATCGAAGAAAGAAGGTTTCCATTCAGTCTCATAAAGCAAGCACCTCTTTCACATAAGA 1018
Query 316 AAGTGGAGGCAGGCTTGTGGGGATACGATCTAAAATGATTCCACATGAAAGAGGACCGGG 375
||||||||||||||||| ||| ||||||||||||||||||||| | | || |||||
Sbjct 1019 AAGTGGAGGCAGGCTTG-GGG-ATACGATCTAAAATGATTCCA-A-G---GA---CCGGG 1068
Query 376 CAATCGCCCTCTTGAGTAATGAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATAAAG 435
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1069 CAATCGCCCTCTTTTTTAATGAAGAAGCGGGCTAGTCCCCGAAAATGCCCGTTAATCAAG 1128
Query 436 CAAGTTGGGGaaaaaaaTC 454
|||||||||||| ||||||
Sbjct 1129 CAAGTTGGGGAACAAAATC 1147
> ATMG00040.1 | Symbols: ORF315 | ATP synthase subunit C family
protein | chrM:16844-17791 REVERSE LENGTH=948
Length=948
Score = 270 bits (146), Expect = 7e-72
Identities = 154/158 (97%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAGCGTGAGTAGAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATTAATAGGT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGACAAAGCGTGAGTATAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATCAATAGGT 60
Query 61 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTCTTCAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGT 120
Query 121 TCTTTGATCCATTCTGTGGCGCGAAATCCATCATTGGC 158
|||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCTTTGATCCATTCTGTGGCTCGAAATCCATCATTGGC 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21765935317
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5