BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484745

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07779.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   490    3e-138


> AT2G07779.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:3254777-3255370 
REVERSE LENGTH=594
Length=594

 Score =  490 bits (265),  Expect = 3e-138
 Identities = 275/279 (99%), Gaps = 3/279 (1%)
 Strand=Plus/Plus

Query  1    ATGTTAACAAACCCAGAAAGGTCGTATCGGTCAGGGAGCCAGAAGCGAGATGCGTGCGCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  ATGTTAACAAACCCAGAAAGGTCGTATCGGTCAGGGAGCCAGAAGCGAGATGCGTGCGCA  378

Query  61   CGGGTGAGAAATCAGCCGTATTTCAGCCTAGTGGAAAGAAGACACTCAGTGCTAGCAGCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  379  CGGGTGAGAAATCAGCCGTATTTCAGCCTAGTGGAAAGAAGACACTCAGTGCTAGCAG--  436

Query  121  GGAGTACTTTCTCGGATACGGTCCCTTTTTATAGGTTTGCTGCCCTGCGACACGTGGCAG  180
            | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  437  G-AGTACTTTCTCGGATACGATCCCTTTTTATAGGTTTGCTGCCCTGCGACACGTGGCAG  495

Query  181  AAGAGGACTCAAGGACACATGCCAGATCTTTGGGTCGGTATTTCTTCCTTAAGATCTCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  496  AAGAGGACTCAAGGACACATGCCAGATCTTTGGGTCGGTATTTCTTCCTTAAGATCTCAA  555

Query  241  CCAACCACCCTTTGGTGGTTTTCCACGACCGAACCATAG  279
            |||||||||||||||||||||||||||||||||||||||
Sbjct  556  CCAACCACCCTTTGGTGGTTTTCCACGACCGAACCATAG  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5