BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484746

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G30460.1 | Symbols:  | RING/U-box superfamily protein | chr3...   632    0.0  


> AT3G30460.1 | Symbols:  | RING/U-box superfamily protein | chr3:12104373-12105039 
FORWARD LENGTH=667
Length=667

 Score =  632 bits (342),  Expect = 0.0
 Identities = 413/446 (93%), Gaps = 9/446 (2%)
 Strand=Plus/Plus

Query  27   aaaaaaaaaTCAATGGCTGAGGAGTTTCATCTTCCTTTAAACCTCACCGAAATAGATCAA  86
            |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||
Sbjct  49   AAAAAAAAATCAATGGCTGAGGAGTTTCATCTTCCTCTAAACCTCACCGAACCAGACCAA  108

Query  87   ATTCCGACCGAAGAAGACTTCGAAGCAGACACTACTTTCATCGACGACGAATACCTCCGT  146
            | ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct  109  ACTCCGACCGAAGAAGATTTCGAAGCAGACACTACATTAATTGACGACGAATACCTCCGT  168

Query  147  TACCTCCACTACTTGGATTCACGGAGCAATCATGGAGTCAACACGTTTGGATCGTACGAC  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  169  TACCTCCACTACTTGGATTCACGGAGCAATCATGGAGTCAACACGTTTGGATCTTACGAT  228

Query  207  GAAATCTTCGGTTTAGTTCTCGGTAATTCATCTTCGAT-T-CAGCG-T--CTTAACGC-G  260
            |||||||| ||| ||||||||||||||||||| ||  | | | ||| |  |||||||| |
Sbjct  229  GAAATCTTTGGTCTAGTTCTCGGTAATTCATCCTCT-TGTAC-GCGGTGGCTTAACGCAG  286

Query  261  GCGGAGGAACTTCCGGTGGTTGAGTTTACGGCTGAGGAAATGATGGAGAGAGGTTTGGTG  320
            | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  287  G-GGAGGAACTTCCGGTGGTGGAGTTTACGGCTGAGGAAATGATGGAGAGAGGTTTAGTG  345

Query  321  GTTTGTGCTATATGTAGAGAGGAGCTCGCTGCTAATGAGAGACTCTCTGAGCTTCCATGT  380
            |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct  346  GTTTGTGCTATATGTAGAGAGGAGCTTGCTGCTAATGAGAGGCTCTCAGAGCTTCCTTGT  405

Query  381  CGGCATTATTACCATAAAAATTGTATCTCGAATTGGTTGAGTAATCGGAACACGTGTCCG  440
            |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct  406  CGGCATTATTACCATAAAGAGTGTATCTCGAATTGGTTGAGTAATCGGAACACTTGTCCG  465

Query  441  CTTTGTCGTCATAACGTGGAATTACC  466
            ||||||||||||||||||||||||||
Sbjct  466  CTTTGTCGTCATAACGTGGAATTACC  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5