BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484749

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G30725.1 | Symbols: AtGDU6, GDU6 | glutamine dumper 6 | chr3...   466    6e-131


> AT3G30725.1 | Symbols: AtGDU6, GDU6 | glutamine dumper 6 | chr3:12352509-12352844 
FORWARD LENGTH=336
Length=336

 Score =  466 bits (252),  Expect = 6e-131
 Identities = 301/324 (93%), Gaps = 6/324 (2%)
 Strand=Plus/Plus

Query  1    ATGAGGCCGACACC---AGTAGAAATCTGGAAGTCACCAGTACCATATCTCTTTGGTGGG  57
            ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGAGGCCGACACCAAAAGTAGAAATCTGGAAGTCACCAGTACCATATCTCTTTGGTGGT  60

Query  58   CTCTTTTTGCTTGTTTTGCTTATAGCTTTGGCATTACTTTCATTGGTCTGCACACACCAA  117
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   CTCTTTTTGCTTGTTTTGCTTATAGCTTTGGCATTACTCTCATTGGTCTGCACACACCAA  120

Query  118  AAATCTCCTTCTTCTTCAAGCAATAACAATCCTATAGATGAAGAAGACGACGTCGGGGAC  177
            |||   |||||||| || ||||||||||||| ||| |||||||||||||| ||||| |||
Sbjct  121  AAA---CCTTCTTCCTCTAGCAATAACAATCATATGGATGAAGAAGACGATGTCGGTGAC  177

Query  178  AAGGAAGCTAAGCCTATTACAAGTGAGTACTTACCTAAGATCGTCGTGATTTTGGCCGGA  237
            ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  178  AAGGACGCTAAGCCTATTACAAGAGAGTACTTACCTAAGATCGTGGTGATTTTGGCCGGA  237

Query  238  GACAATAAACCTACTTGCTTGGCTGTTCCAGTCGCGGTTCCTCCGCCTTCTTCCATTTGT  297
            ||||||||||||||||||||||||||||| |||| ||||||||| ||  ||||||||| |
Sbjct  238  GACAATAAACCTACTTGCTTGGCTGTTCCGGTCGTGGTTCCTCCACCCACTTCCATTTTT  297

Query  298  CGTTGTAACTGTGACAATGTTACT  321
            ||||||||||||||||||||||||
Sbjct  298  CGTTGTAACTGTGACAATGTTACT  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5