BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484750
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30775.1 | Symbols: ERD5, PRODH, AT-POX, ATPOX, ATPDH, PRO1 ... 2726 0.0
> AT3G30775.1 | Symbols: ERD5, PRODH, AT-POX, ATPOX, ATPDH, PRO1
| Methylenetetrahydrofolate reductase family protein | chr3:12448636-12451248
REVERSE LENGTH=1866
Length=1866
Score = 2726 bits (1476), Expect = 0.0
Identities = 1708/1816 (94%), Gaps = 31/1816 (2%)
Strand=Plus/Plus
Query 1 AGAAGAAAACAGCGATAAAACCGAAACAT----CAAAC--aaaaaaaagagaagagaaat 54
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 18 AGAAAAAAACAGCGATAAAACCGAAACATCAAGCAAACAAAAAAAAAAGAGAAGAGAAAT 77
Query 55 ca---ttttttgttttcgttttcaaaaacaaaatctttgaattttATGGCAACCCGTCTT 111
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TATTTTTTTTTGTTTTCGTTTTCAAAAACAAAATCTTTGAATTTTATGGCAACCCGTCTT 137
Query 112 CTCCGAACAAACTTTATCCGACGATCTTACCGTTTACCCGCTTTTAGCCCGGTGGGTCCT 171
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 138 CTCCGAACAAACTTTATCCGGCGATCTTACCGTTTACCCGCTTTTAGCCCGGTGGGTCCT 197
Query 172 CCCACCGTGACTGCTTCCACCGCCGTCGTCCCGGAGATTCTCTCCTTTGGACAACAAGCA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CCCACCGTGACTGCTTCCACCGCCGTCGTCCCGGAGATTCTCTCCTTTGGACAACAAGCA 257
Query 232 CCAGAACCACCTCTTCACCACCCAAAACCAACCGAAG-AATCTCACGATGGTCTCGATCT 290
|| |||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 258 CCGGAACCACCTCTTCACCACCCAAAACCCACCG-AGCAATCTCACGATGGTCTCGATCT 316
Query 291 CTCCGATCAAGCCCGTCTTTTCTCCTCTGTCCCAACCTCTGATCTCCTCCGTTCCACCGC 350
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 317 CTCCGATCAAGCCCGTCTTTTCTCCTCTATCCCAACCTCTGATCTCCTCCGTTCCACCGC 376
Query 351 CGTGTTGCATGCGGCGGCGATAGGTCCTATGGTCGATCTAGGAACGTGGGTCATGAGCTC 410
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 377 CGTGTTGCATGCGGCGGCGATAGGTCCTATGGTCGACCTAGGGACGTGGGTCATGAGCTC 436
Query 411 TAAACTTATGGACGCCGCTGTGACGCGTGGCATGGTTTTAGGGCTTGTGAAAGGTACGTT 470
||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 437 TAAACTTATGGACGCTTCGGTGACGCGTGGCATGGTTTTAGGGCTTGTGAAAAGTACGTT 496
Query 471 TTATGACCATTTTTGCGCCGGTGAAGATGCCGACGCAGCCGCTGAGCGCGTGCGAAGCGT 530
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 497 TTATGACCATTTTTGCGCCGGTGAAGATGCCGACGCAGCCGCTGAGCGCGTGAGAAGCGT 556
Query 531 TTATGAAGCTACGGGTCTTAAAGGTATGCTTGTCTATGGCGTCGAACACGCCGATAACGC 590
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 557 TTATGAAGCTACTGGTCTTAAAGGGATGCTTGTCTATGGCGTCGAACACGCCGATGACGC 616
Query 591 TGCATCTTGTGATGATAACATGCAACAATTTATTCGAACCATTGAAGCTGCCAAATCTTT 650
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 617 TGTATCTTGTGATGATAACATGCAACAATTCATTCGAACCATTGAAGCTGCCAAATCTTT 676
Query 651 ACCAACATCTCACTTTAGCTCAGTGGTCGTGAAGATAACCGCGATTTGTCCAATTAGTCT 710
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 677 ACCAACATCTCACTTTAGCTCAGTGGTTGTGAAGATAACTGCCATTTGTCCAATTAGTCT 736
Query 711 TCTGAAACGAGTGAGCGATTTGCTTCGATGGGAATACAAGAGTCCAAATTTCAAACTCTC 770
||||||||||||||||||| |||| || ||||||||||| ||||| || |||||||||||
Sbjct 737 TCTGAAACGAGTGAGCGATCTGCTGCGGTGGGAATACAAAAGTCCGAACTTCAAACTCTC 796
Query 771 GTGGAAGCTCAAATCGTTTCCGGTTTTCTCCGATTCGAGTCCTCTCTACCACACAAACTC 830
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 797 ATGGAAGCTCAAATCGTTTCCGGTTTTCTCCGAATCGAGTCCTCTCTACCACACAAACTC 856
Query 831 AGAACCGGAACCCTTAACCGCAGAAGAAG-AAGAGGAGCTTGAAGCAGCTCATGGAAGGA 889
|||||||||||| |||||||| ||||||| ||| |||||| |||||||||||||||||||
Sbjct 857 AGAACCGGAACCGTTAACCGCGGAAGAAGAAAG-GGAGCTCGAAGCAGCTCATGGAAGGA 915
Query 890 TTCAAGAAATCTGTAGGAAATGCCAAGAGTCCAATGTACCTTTGCTT-ATCGATGCGGAA 948
|||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||
Sbjct 916 TTCAAGAAATCTGTAGGAAATGCCAAGAGTCCAATGTACCATTG-TTGATTGATGCGGAA 974
Query 949 GACACGATCCTCCAACCGGCGATCGATTACATGGCTTATTCAAT-GGCGATTATGTTCAA 1007
||||| ||||||||||| ||||||||||||||||||||||| || |||||| ||||||||
Sbjct 975 GACACAATCCTCCAACCCGCGATCGATTACATGGCTTATTC-ATCGGCGATCATGTTCAA 1033
Query 1008 TGCGGACAAAGACCGACCGATTGTTTACAACACTATTCAGGCGTACTTGAGAGATGCAGG 1067
||| |||||||||||||| || ||||||||||| |||||||||||||||||||| || ||
Sbjct 1034 TGCTGACAAAGACCGACCAATCGTTTACAACACGATTCAGGCGTACTTGAGAGACGCCGG 1093
Query 1068 TGAGAGATTGCATTTGGCAGTACAAAATGCCGAGAAAGAGAATGTTCCTATGGGGTTCAA 1127
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1094 TGAGAGACTGCATTTGGCAGTACAAAATGCTGAGAAAGAGAATGTTCCTATGGGGTTCAA 1153
Query 1128 GTTGGTGAGAGGGGCTTACATGTCTAGCGAAGCTAGATTGGCTGATTCCTTGGGTTGCAA 1187
|||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1154 GTTGGTGAGAGGGGCTTACATGTCTAGCGAAGCTAGCTTGGCGGATTCCCTGGGTTGCAA 1213
Query 1188 GTCACCAGTCCACGACACAATTCAGGACACACACTCTTGTTACAACAACTGTATGACCTT 1247
||| ||||||||||||||||||||||| || |||||||||||||| | |||||||| ||
Sbjct 1214 GTCGCCAGTCCACGACACAATTCAGGATACTCACTCTTGTTACAATGATTGTATGACATT 1273
Query 1248 CCTGATGGAGAAAGCCTCAAACGGATCAGGTTTTGGCGTCGTTCTTGCAACACATAACGC 1307
||||||||||||||| |||||||| || ||||| || |||||||| ||||||||||||||
Sbjct 1274 CCTGATGGAGAAAGCATCAAACGGTTCTGGTTTCGGTGTCGTTCTCGCAACACATAACGC 1333
Query 1308 TGATTCTGGGAGACTTGCGTCAAGGAAAGCGAGTGACCTCGGGATCGATAAACAGAACGG 1367
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1334 TGATTCGGGGAGACTTGCGTCGAGGAAAGCGAGTGACCTCGGGATCGATAAACAGAACGG 1393
Query 1368 GAAGATAGAGTTTGCACAACTATATGGTATGTCAGATGCATTGTCCTTCGGTTTAAAGAG 1427
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1394 GAAGATAGAGTTTGCACAGCTATATGGTATGTCAGATGCATTGTCCTTCGGGTTAAAGAG 1453
Query 1428 AGCCGGGTTCAATGTTAGCAAGTACATGCCGTTTGGACCCGTCGCAACCGCTATACCGTA 1487
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 AGCAGGGTTCAATGTTAGCAAGTACATGCCGTTTGGACCCGTCGCAACCGCTATACCGTA 1513
Query 1488 TCTTCTCCGACGCGCTTATGAGAACCGGGGAATGATGGCCACCGGAGCCCATGACCGCCA 1547
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1514 TCTTCTCCGACGCGCTTATGAGAACCGGGGAATGATGGCCACCGGAGCTCATGACCGTCA 1573
Query 1548 ACTCATGAGGATGGAACTTAAGAGGAGATTAATCGCCGGAATTGCGTAAAGAGAAGCGTT 1607
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1574 ACTCATGAGGATGGAACTTAAGAGGAGATTAATCGCCGGGATTGCGTAAAGAGA-GAGT- 1631
Query 1608 TAATTGTCATAAGCCATTAAATGAAATTGGGAAATGTAGATGAATAAATTTCTTCTATGT 1667
| | | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 -A-TGG--A---GCCATTAAATGAAATTGGGAAATGTAGATGAATAAATTTCTTCTATGT 1684
Query 1668 AGATTAAGAAATTGAAAACACaaaaaaaaaTTATAATATAAGAAATGGAGTAGGTAAGAA 1727
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1685 AGTTTAAGAAATTGAAAACA-AAAAA----TTATAATATAAGAAATGGAGTAGGTAAGAA 1739
Query 1728 CATTTCATGTGGCTTAATATTTTTCATGACGGACTATGTTTTTATTATCAATATATCATT 1787
|||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1740 CATTTCCTGTGGCTAAATATTTTTCATGAGGGACTATGTTTTTACTATCAATATATCATT 1799
Query 1788 CACAACTGTATATTCA 1803
||||| ||||||||||
Sbjct 1800 CACAAATGTATATTCA 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5