BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484754
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT3G32930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1321 0.0
> AT3G32930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast
hits to 57 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:13489518-13490849
FORWARD LENGTH=972
Length=972
Score = 1321 bits (715), Expect = 0.0
Identities = 802/844 (95%), Gaps = 5/844 (1%)
Strand=Plus/Plus
Query 1 AAACTCAGCCGCCCAGATCAAGAAACAACAATGCAAGTCTCACTGGTTCAAGTCTCTTCA 60
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 49 AAACTCAGCCGCCCAGATCAA-AAACAACAATGCAACTCTCACTGGTTCAAGTCTCTTCA 107
Query 61 GTGTCCTACTTCAGATCTCAATCAACGATTCCTACTCTCTCCAACTCCAACCCCTCTTGT 120
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 108 GTGTCCAACTTCAGATCCCAATCAACGATTCCTACTCTCTCCAACTCAAACCCATCTTGT 167
Query 121 TTCCTTCTGCCAAAGTCCATCTTTCCTGGGTCCAAGTTAACCCTCCATCGATTTTTTCGT 180
|| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 168 TTACTTCTTCAAAAGTCCATCTTTCCTGGGTCCAAGTTAACCCTCCATCGAATTTTTCGT 227
Query 181 TATCCCAAGAAAATCTCAAATGGGTCTGCTCGTGCTTCTCTGCTTGAGACCCCTGTCTTA 240
||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||
Sbjct 228 TATCCGAAGAAAATCTCAAATGGCTCTACTCGTGCTTCACTGCTTGAGACCCCTATCTTA 287
Query 241 TGGGCTGGTCGGATTTGTGTCTTCTACGCTCTCGTGAAAGCTGGTTTTGCTGGATCCAAG 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 288 TGGGCTGGTCGGATTTGTGTCTTCTACGCTCTCGTGAAAGCTGGCTTTGCTGGATCCAAG 347
Query 301 TCTAACCCTATCGTTTCTGGTTTGGAAAGTGGTGGTGTTGATGTTG-A-A-GATGATGGT 357
|||||||||||||||||||||||||| | ||||||||||||||||| | | |||||||||
Sbjct 348 TCTAACCCTATCGTTTCTGGTTTGGATACTGGTGGTGTTGATGTTGAATATGATGATGGT 407
Query 358 GCTGATCTTGGTTTCTCAAAGTGGCTTCAGAACATTAAGGGCAACAAACCAGATAAGGAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GCTGATCTTGGTTTCTCAAAGTGGCTTCAGAACATTAAGGGCAACAAACCAGATAAGGAT 467
Query 418 GCAGCTGATAAGAGGAAGCTAGTGAGCAAATGGCACCCGACGACAAAGGGAACACTTAGA 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 468 GCAGCTGATAAGAGGAAGCTAGTGAGCAAATGGCACCCAACGACAAAGGGAACACTTAGA 527
Query 478 AGGAACTACAGGATACCTTCCAAAGGCGAAGGAAACCGTTTGCTTAAAGCCATTGCGTCT 537
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 528 AGGAACTACAGGATACCTTCGAAAGCCGAAGGAAACCGTTTGCTTAAAGCCATTGCGTCT 587
Query 538 CTTCTCTCAGATGATGATCATTTTAGGGATGCAACATCTCACAAGGGTTGTCAAATTCGG 597
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 588 CTTCTCTCAGATGATGATCATTTTAGAGATGCAACATCTCACAAGGGTTGTCAAATACGG 647
Query 598 CGGGAGAGTGCGCATGGCCAAAGTGTATGTTGCAACAATGTGAGAGCTCTGTTTGATGAG 657
||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 648 AGGGAGAGTGCGCACGGTCAAAGCGTATGTTGCAACAATGTGAGAGCTCTGTTTGATGAG 707
Query 658 TTACCGACGCCACATTTGGTGGTGGAGATCACACCTTTTCCAGCCGGACCGCTTACAGAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 708 TTACCGACGCCACATTTGGTGGTGGAGATCACACCTTTTCCAGCCGGACCGCTCACAGAG 767
Query 718 AATGATTACCTTAAGGCCGAAAAGCTGGAAAGGATTCTTAGGTCAGGCCCCAACATTTGA 777
||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||||||
Sbjct 768 AATGATTACCTTAAGGCTGAGAAGCTGGAGAGGATTCTTAGGTCTGGCGCCAACATTTGA 827
Query 778 ACTCTCT-GGCAGTGTTCTACTATATGTCAAAATCTAGAATCTGTACATACTCTACGGTG 836
|| |||| ||||||||| |||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 828 ACCCTCTTGGCAGTGTTTTACTATGTGTCAAAATCTAGAACCTGTACATACTCTACGATG 887
Query 837 TCTT 840
||||
Sbjct 888 TCTT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5