BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484755
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
AT3G32940.1 | Symbols: | RNA-binding KH domain-containing prot... 1820 0.0
> AT3G32940.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:13490945-13493787 REVERSE LENGTH=2125
Length=2125
Score = 1820 bits (985), Expect = 0.0
Identities = 1262/1393 (91%), Gaps = 29/1393 (2%)
Strand=Plus/Plus
Query 1 AGGATAAAAGAA-AATAAGCTCTACGGTATTTCTCTCAAACCCTTAACGACGAGAGCCAT 59
|||| |||| || || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 35 AGGA-AAAAAAACAAAAAGCTCTACGGTATTTCTCTCAAACCCTTAACGACGAGAGCCGT 93
Query 60 CGCTAATTTGACGACGTGACTCTTAGGTCGAAAGAAAAACTCCGCCGCTACG-TTACTCC 118
|||||| | |||||||| | |||||||||||| | ||||||||||||||||| ||| | |
Sbjct 94 CGCTAA-TCGACGACGTAATTCTTAGGTCGAACGGAAAACTCCGCCGCTACGTTTAGT-C 151
Query 119 G-AGAGATGACATCTACTAACGGTGCGAAGATCTCAATGTTTGGTGCCAAATCTGGATTT 177
| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 152 GAAGAGATGACTTCTACTTCCGCTGCGAAGATCTCAATGTTTGGTGCCAAATCTGGATTC 211
Query 178 GTGATCCCTAAAAACAAACTCTCTGGATCATTGGTCCCGATTTTTCAACGTGGGAACACA 237
|| ||||||||||||||||| |||||||||||| |||| |||||||||||||| |||| |
Sbjct 212 GTTATCCCTAAAAACAAACTATCTGGATCATTGATCCCAATTTTTCAACGTGGAAACAAA 271
Query 238 ACCCTAGGAGGTGCCAATGATACGA-ATACTGGACTTCCTTCGAAGCTGGTGAAGAAGAG 296
||||||||| ||||| ||| | | | ||||||| ||| |||||||||| |||||| ||
Sbjct 272 ACCCTAGGAAGTGCC---GATTC-AGACACTGGACCTCCGTCGAAGCTGGGGAAGAAAAG 327
Query 297 AAAGACTAATTGGGGTCCTGATTTGTCACAAGATATTGGAGTCAAGAAAGGTCGATTTTT 356
||||||||| |||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 328 AAAGACTAAATGGGCTCCTGATTTGTCACAAGATATTGCAGTCAAGAAATGTCGATTTTT 387
Query 357 AGCTTACCAGAAACGCCTGGATCAAATTACACAGCGATTGGAATCGGGAACTCTTGAAGT 416
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 388 AGCTTACCAGAAACGCGTGGATCAAATTACACAGCGATTGGAATCTGGAACTCTTGAAGT 447
Query 417 GGAGACTAATAGAGAAC--AGCTTGAAATTGAAAAACGCGAAGCAATTGGGGAGATACTC 474
|||||||||| ||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 448 GGAGACTAAT--AGAACTGACCTGGAGTTTGAAAAACGCGAAGCAATTGGGGAGATACTC 505
Query 475 GAGTTGAATCCGAGGTACAAGGCTCCACCTGATTATAAGCCATTGCTGAAAGAAGCTAGG 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAGTTGAATCCGAGGTACAAGGCTCCACCTGATTATAAGCCATTGCTGAAAGAAGCTAGA 565
Query 535 TTGCCGATCGACGTAAAAGAACATTCTGATTTCAGCTTTCTAAGTCTCATATTTGGTTCC 594
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 TTGCCGATCGATGTTAAAGAACATTCTGATTTCAGCTTTCTAAGTCTCATATTTGGTTCC 625
Query 595 CAAGGTGATACTCAAAAGCGGCTCGAAAAAGAGACTGGAGCCAAAGTACAAATTTTTGGT 654
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 626 CAAGGTGATACTCAAAAGCGGCTCGAAAAAGAGACTGGAGCTAAAGTACAAATTTTCGGT 685
Query 655 ACTAAAACAGGAGGAGAGAAGGTTGAACTCTCTCCTTCAGATGAAAATAAAATCCAGACG 714
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
Sbjct 686 ACTAAAACAGGAGGAGAGAAGGTTGAACTCTCTCCTTCGGATGAAAATGAGATCCAGAAG 745
Query 715 TCGTGGCAAGAGTTATATTTTCAAATATCATCTGACACTTACGAAAAAGTGGATGCAGCT 774
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 746 TCATGGCAAGAGTTATATTTTCAGATATCATCTGACACTTACGAAAAAGTGGATGCAGCT 805
Query 775 ATTGCTGTAATTGAGCTACTTATCTCTTCAGTGTCTGGAAATACAGAAGCTGGTGCTGCT 834
||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 806 ATTGCTGTAGTTGAGCTACTTATGTCTTCAGTGTCTGGAAATACAGGAGCTGGTGCTGCT 865
Query 835 CCTCCATCTTCCAGATCTGGAGAG-ATTTCAACTATTCTAGAAAACAGCAAC--ATGCTT 891
||||||||||||| ||||| | | ||||||||||||| || ||||||| | | ||
Sbjct 866 CCTCCATCTTCCATATCTGAA-ATTATTTCAACTATTCCAGGCAACAGCATCGCAA-CT- 922
Query 892 GCTACCAACCC-GAGCTCTGAACA-ACCAACTGCCCAAAGCCAAGTCCAACAGCATGGTT 949
||||| | ||| || |||||||| || ||||| ||| |||||||||| |||||||||||
Sbjct 923 GCTAC-AGCCCCGACCTCTGAACGGAC-AACTGACCATAGCCAAGTCCTACAGCATGGTT 980
Query 950 CCTCCTTTCTTTTGGATTCAAATCAAGCTACATTTCATCCATCTCTTAAACCCTATGCTT 1009
|||| |||| |||| ||||||||||||| || |||||||| ||||| ||| || || ||
Sbjct 981 CCTCATTTCATTTGTCTTCAAATCAAGCTCCACTTCATCCACCTCTTGAACACTTTGTTT 1040
Query 1010 CAGGTCTTGGGTATAGTATCCAGGAACAAGAACTGCCTACCAATT-TGATGAACCTCAAT 1068
|||||||||| |||| ||||||||| ||||||||||||| |||| | ||||| ||||||
Sbjct 1041 CAGGTCTTGGTTATAATATCCAGGAGCAAGAACTGCCTAAAAATTCT-ATGAATCTCAAT 1099
Query 1069 CATCTTTCTGCTCAGCAAAC-ACTTCCAGTTCCTCATGACACATCATTACCTCTTGGTTC 1127
| ||||| |||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1100 CCTCTTTTTGCTCAGCAA-CTACTTCCAGTTCCTCATGACACATCATTACCTCCTGGTTC 1158
Query 1128 TCACGTCCCTCGACCACCAGATTCGTTCTCTTTTAGCCTTTCCAACACACCAAGGGCCTA 1187
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1159 TCACGTCCCTCGACCACCGGATTCGTTCCCTTTTAGCCTTTCCAACACACCAAGGACCTA 1218
Query 1188 TTCTGTGACTGCGCATCCTTATTCTTGCAGTCAGATACAACCAATAGGACCAGGTTCTAC 1247
|||||||||| || ||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 1219 TTCTGTGACTTTGCCTCCATATTCTGGCAGTCAGATACAACCAATAGGACCACGTTCTAC 1278
Query 1248 TATGAGGCCGTCGACCCTATTTACTTTCCAACCTGTACATAGACCAACACTGTTGCCAGA 1307
| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1279 TGTGAGGCCGTCGACCCTATTTACTTTCCATCCTGTACATAGACCAACACTGTTACCAGA 1338
Query 1308 CATAGTCCAATCAGTACGGCCTCTGGCTCCTAACTTTAGTCCACATCCGGTACCTCATCA 1367
||||| |||||||||||||||| ||||||||||||| ||||||||||| ||| |||||||
Sbjct 1339 CATAGACCAATCAGTACGGCCTTTGGCTCCTAACTTCAGTCCACATCCTGTAGCTCATCA 1398
Query 1368 GCCAGGTACTGAA 1380
|||||||||||||
Sbjct 1399 GCCAGGTACTGAA 1411
Score = 730 bits (395), Expect = 0.0
Identities = 530/593 (89%), Gaps = 18/593 (3%)
Strand=Plus/Plus
Query 1385 TAGCAGAATATGATTCTGGTGGTTCTCTGCGTCCCATGTCAGTGTCAGCACATATTGCTG 1444
|||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1449 TAGCAGAATATGGTTCTGGTAGTTCTCTGCGTCCCATGTCAGTGTCACCACATATTGCTA 1508
Query 1445 GTAGGCCTGCTGG-CATTGTTCCTACTTATCCTCCCATAAATCCTGC-TCATAGACCATT 1502
||||||||||||| | ||||||| |||||||||||| |||| |||| || ||| || ||
Sbjct 1509 GTAGGCCTGCTGGTC-TTGTTCCGGCTTATCCTCCCACAAATACTGCTTC-TAGGCCGTT 1566
Query 1503 TCACGGGGATTTTGGTTTCCTTCCACAACAACCAAACGTTGTTTCCACACCACATATATA 1562
|||||||||||| |||| | | ||||||||| ||||| || || |||||||||||||||
Sbjct 1567 TCACGGGGATTTCGGTTACATACCACAACAATCAAACATTATTACCACACCACATATATC 1626
Query 1563 TCCTATACCCAACTCTCAATCAGCTCATCTTCCTCATCTGGCATTTCAAGCCTCTCAACA 1622
|||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1627 CCCTAGACCCAACTCACAATCAGCTCATCTCCCTCATCTGCCATTTCAAGCCTCTCAACA 1686
Query 1623 TTTTGAGCAAAATCACACAAGATCACAACACTTCGGCAGGCAGATGGATCATCCCTTGAG 1682
||||| ||||||| ||||||||| || ||||||| ||||||||||||||| ||||||||
Sbjct 1687 TTTTGGGCAAAATTTCACAAGATCGCAGCACTTCGACAGGCAGATGGATCAACCCTTGAG 1746
Query 1683 CCACCCATCTGCACCATTTCATGGTA-CTGCGAGATCTTCCAACTTGCAGAACTTTGGAC 1741
|||||||||||||||||||||||||| | |||||||| ||| | | | | ||
Sbjct 1747 CCACCCATCTGCACCATTTCATGGTAAC-GCGAGATCA---AACGT-C-G------G-AC 1793
Query 1742 CTCCATTGTCTCAGATGATGCCTAGGAACTTCCCTGGGGCTCAATTCCCGCAGCAGTCTG 1801
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1794 CTCCATTGTCTCAGATGATGCCTAGAAACTTCCCTGGAGCTCAATTCCCGCAGCATTCTG 1853
Query 1802 CTCATTTCCCTCCAAGACCAGTGTTTCATCATGATAACCTGATACCACGTGGCCAACCAC 1861
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1854 CTCATTTCCCTCCAAGACCAGTGTTTCATCATGATAACCTGATACCGCGTGGCCAGCCAC 1913
Query 1862 AGATTCGCCACCGGTTCAACTCTGGTGTCCATCAAGTATATGACCCGTTTTCACCTAGTG 1921
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1914 AGATTCGCCAACGGTTCAACTCTGGTGTCCATCAAGTATATGACCCTTTTTCACCTAGTG 1973
Query 1922 ATGCTTAATACAGTAGTGTGTTTTCAATAGCCACGTTTCTGCATTAGGGACTG 1974
||| ||||| ||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct 1974 ATGGTTAATTCAGTATTGTGTTTTCAATAGCCATGTTTCTGCAATAGGGACTG 2026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97790661660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5