BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484760
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT3G33520.1 | Symbols: ATARP6, ARP6, SUF3, ESD1 | actin-related... 2237 0.0
> AT3G33520.1 | Symbols: ATARP6, ARP6, SUF3, ESD1 | actin-related
protein 6 | chr3:14093656-14095549 REVERSE LENGTH=1474
Length=1474
Score = 2237 bits (1211), Expect = 0.0
Identities = 1316/1367 (96%), Gaps = 5/1367 (0%)
Strand=Plus/Plus
Query 1 CGGCGGCGAGTGATCGTCACCAATGTCAAACATCGTGGTTCTAGATAACGGCGGCGGTCT 60
||||||||||| ||||||| |||||||||||||||| |||||||| |||||||| |||||
Sbjct 52 CGGCGGCGAGTCATCGTCATCAATGTCAAACATCGTTGTTCTAGACAACGGCGGTGGTCT 111
Query 61 AATCAAAGCCGGACAAGGCGGCGAGCGTGATCCCACCACCGTAATCCCAAACTGTCTCTA 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 112 AATCAAAGCCGGACAAGGCGGCGAGCGTGATCCCACCACCGTAATCCCGAACTGTCTCTA 171
Query 121 CAAACCTCTCTCCTCCAAGAAATTCCTCCACCCATCACCACTCACCAGTCTCTCCGACGA 180
|||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 172 CAAACCTCTCTCTTCCAAAAAATTCATCCACCCATCACCACTCACCACTCTCTCCGACGA 231
Query 181 AATCGACCTCACCTCCGCCGCCGTACGCCGCCCAATCGACCGTGGCTACCTCATAAACTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AATCGACCTCACCTCCGCCGCCGTACGCCGCCCAATCGACCGTGGCTACCTCATAAACTC 291
Query 241 CGATTTACAACGCGAAATCTGGTCACACCTATTCACTTCTTTCCTCCACATCA-ctcctt 299
||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 292 CGACCTACAACGCGAAATCTGGTCACACCTATTCACTTCCCTCCTCCACAT-AGCTCCTT 350
Query 300 cctcctcctctctcctcctcACCGAAGCACCACTCTCAATCCCTTCCGTTCAACGAACCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CCTCCTCCTCTCTCCTCCTCACCGAAGCACCACTCTCAATCCCTTCCGTTCAACGAACCA 410
Query 360 CCGACGAGCTCGTCTTCGAAGATTTCGGATTCTCTTCTCTCTATGTAGCTCATCCTCAAT 419
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 411 CCGACGAACTCGTCTTCGAAGATTTCGGATTCTCTTCTCTCTATATAGCTCATCCTCAAT 470
Query 420 CTCTTGTTCATCTCTATGAAGCTAGTCGTCAGCCTGATTCAATCCTCTCAAAGACTCAGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTCTTGTTCATCTCTATGAAGCTAGTCGTCAGCCTGATTCAATCCTCTCAAAGACTCAGT 530
Query 480 GTAGTCTCGTTGTTGATTGTGGTTTCTCCTTCACTCACGCTGTTCCTGTTCTTCACAATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTAGTCTCGTTGTTGATTGTGGTTTCTCCTTCACTCACGCTGTTCCTGTTCTTCACAATT 590
Query 540 TCACTCTTAATCACGCCATTAAGAGGATTGATTTAGGAGGAAAAGCTTTTACTAATTACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCACTCTTAATCACGCCATTAAGAGGATTGATTTAGGAGGAAAAGCTTTTACTAATTACT 650
Query 600 TGAAGGAATTGGTGTCTTATAGATCTATCAATGTTATGGATGAAACGTTTTTAGTTGATG 659
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 651 TGAAGGAATTGGTTTCTTATAGATCTATTAATGTTATGGATGAAACTTTTTTAGTTGATG 710
Query 660 ATGCTAAGGAGAAGCTTTGTTTTGTTTCACTTGATCTTCTTCGCGATCTCCGCCTTGCTC 719
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 711 ATGCTAAAGAGAAGCTTTGTTTTGTTTCACTTGATCTTCTTCGTGATCTCCGCCTTGCTA 770
Query 720 GAAATGGAAACAATCTTATCAAGTCTACTTATGTTCTTCCTGATGGTGTTACACATACCA 779
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GAAATGGGAACACTCTTATCAAGTCTACTTATGTTCTTCCTGATGGTGTTACACATACCA 830
Query 780 AAGGTTATGTTAAAGACCCTCAAGCTGCTAAGAGGTTTCTTAGTTTGTCAGAGAAAGAG- 838
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AAGGCTATGTTAAAGACCCTCAAGCTGCTAAGAGGTTTCTTAGTTTGTCAGAGAAAGAGT 890
Query 839 CA-TG-TGGTGATGGATAAGGTTGGGGAGAGGAGGAAGGCTGACATGAACAAAAACGAGA 896
| || ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 891 CTGTGGTGGTGATGGATAAGGTTGGGGAGAGAAAGAAGGCTGACATGAACAAAAATGAGA 950
Query 897 TTGACTTAACGAATGAGCGTTTTCTTGTACCTGAGACGTTATTCCAGCCTGCGGATCTAG 956
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 951 TTGATTTAACGAATGAGCGTTTTCTTGTACCTGAGACGTTATTCCAGCCTGCAGATTTAG 1010
Query 957 GGATGAATCAGGCGGGACTTGCAGAATGCATTGTCCGAGCTATAAACTCATGCCATTCTT 1016
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1011 GGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCATGCCATTCTT 1070
Query 1017 ACTTGCAACCAGTTTTGTATCAAAGCATCATCTTAACTGGTGGAAGCACATTATTTCCAC 1076
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1071 ACTTGCAACCAGTTTTGTATCAAAGCATTATCTTAACTGGTGGAAGTACATTATTTCCAC 1130
Query 1077 AACTTAAGGAGAGACTAGAAGGAGAGCTGCGACCACTTGTCCCCGATCACTTTGATGTGA 1136
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1131 AACTTAAGGAGAGACTAGAAGGAGAGCTTCGACCACTTGTCCCAGATCACTTTGATGTGA 1190
Query 1137 AGATAACAACTCAGGAGGACCCCATACTAGGTGTATGGAGAGGTGGTTCACTTTTGGCTT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 AGATAACAACTCAGGAGGACCCCATACTAGGTGTATGGAGAGGTGGTTCACTTTTGGCTT 1250
Query 1197 CGAGCCCGGATTTTGAGTCCATGTGTGTCACCAAGGCTGAGTACGAAGAGCTTGGATCAG 1256
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1251 CCAGCCCGGATTTCGAGTCCATGTGTGTCACCAAGGCTGAGTACGAAGAACTTGGATCAG 1310
Query 1257 CTCGGTGTCGTAGAAGATTCTTTCATTGAGGCTAACCAAAACAATATCAAATGAGTTGGT 1316
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1311 CTCGGTGTCGTAGACGATTCTTTCATTGAGGCTAACCAAAACAATATCACATGAGTTGGT 1370
Query 1317 TGTAAGTTGTAATTCTTCACATTATGTGTCGAATATCGTAATGCATG 1363
||||||||| ||||||||||||||| ||||| |||| ||||||||||
Sbjct 1371 TGTAAGTTGAAATTCTTCACATTATTTGTCGTATATTGTAATGCATG 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5