BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484762
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42630.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1847 0.0
> AT3G42630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:14722250-14723857 FORWARD LENGTH=1534
Length=1534
Score = 1847 bits (1000), Expect = 0.0
Identities = 1158/1236 (94%), Gaps = 4/1236 (0%)
Strand=Plus/Plus
Query 27 TCTATCTTTGGAACCCCAACAACTCAAGCTCTTATCTTGTTACACGGATTCGTCTGCTCC 86
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 79 TCTATCTTTGAAACCCCAACATCTCAAGCTCTTATCTTGTTACACGGATTCGTCTGCTCC 138
Query 87 TTCAATCGCTCGAAAGTTGATCAAGGAATCAAAGCTATCAAGAGATTTCAGTCGAAAGAT 146
||||||||| ||||||||||||||||||||||||||| || || ||||||| ||||||
Sbjct 139 TTCAATCGCGAAAAAGTTGATCAAGGAATCAAAGCTATCTAGGGACTTCAGTCAAAAGAT 198
Query 147 ACAAATTGTAGACTATGCTCCATTAGTCCAAACTTTAAGCCAGAGAAGATTGCCTGATGT 206
|||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 199 ACAAATCGTAGACTACGCTCCATTAGTTCAAACTTTAAGCCAGAGAAGATTACCTGATGT 258
Query 207 TGCTCATGAGATTTTTATCCAAACGAAATCAGTTAACTTGTTGCCAAATTATAGAACCCT 266
||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 259 AGCTCATGAGATTTTTCTCCAAACGAAATCAGTTAACTTGTTACCAAATTACAGAACCCT 318
Query 267 TTGCGCTCTTACGCTTTGCTTTGCTGAAAATGGGTTTGTTCTTCGAGCACGTATGATTTG 326
||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 319 TTGTGCTCTTATGCTTTGTTTTGCTGAAAATGGGTTTGTTCTTCGAGCACGTACGATTTG 378
Query 327 GGATGGGATTTTAAACAGTTCTTTCGTGCCCGATGTCTTTGTCGTCTCTAAGCTTATATC 386
||||| |||| ||||||||| ||| || || ||||||||||| |||||||||||||||||
Sbjct 379 GGATGAGATTATAAACAGTTGTTTTGTACCTGATGTCTTTGTAGTCTCTAAGCTTATATC 438
Query 387 TGCTTACGAGCAGGTTGGtttttttGATGAAGTTGCCAAGATCACCAAGGATGTTGCTGC 446
|||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 439 TGCTTATGAGCAATTTGGTTGTTTTGATGAAGTTGCCAAGATCACCAAGGATGTTGCTGC 498
Query 447 AAGGCATTCGAAGCTGCTTCCGGTTGTGTATTCAGTTGCTATATCGTGTTTTGGTAAGAA 506
|||||| |||||||| ||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 499 AAGGCACTCGAAGCTTCTTCCGGTTGTGTCTTCACTTGCTATATCCTGTTTTGGTAAGAA 558
Query 507 TGGTCAGTTGGAATTGATGGAGGGTGTTATAGAGGAAATGGATTCGAAGGGAATGTCGTT 566
||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 559 TGGACAGTTGGAACTGATGGAGGGTGTTATAGAGGAAATGGATTCAAAGGGAGTGTTGTT 618
Query 567 AGATTCTGCTACTGCTAATGCGATTGTTAGATACTTTAGTTTTTTCGGTACTTTAGATAA 626
||| ||| |||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 619 AGAGGCTGAGACTGCTAATGTGATTGTTAGATACTATAGTTTTTTCGGTAGTTTAGATAA 678
Query 627 GATAGAGCAGGCTTATGGCCGGCTTAAGAAGTTTGGAT-TTGTGATAGAGGAAGAAGAGA 685
||| ||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 679 GATGGAGAAGGCTTATGGCCGGGTTAAGAAGTTTGG-TATTGTGATAGAGGAAGAAGAGA 737
Query 686 TAAGAGCTGTGTTGTTAGCATACTTAAAACAACGGAAGTTTTATCGGCTACGTGAGTTTT 745
||||||||||| ||||||| ||||| ||||||||||||||||||||| |||| |||||||
Sbjct 738 TAAGAGCTGTGGTGTTAGCGTACTTGAAACAACGGAAGTTTTATCGGTTACGCGAGTTTT 797
Query 746 TGTCAGATGTTGGTCTCGGTAGAAGAAATCTTGGGAATATGTTATGGAATTCTGTATTAC 805
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 798 TGTCAGATGTTGGTCTCGGTAGAAGAAATCTTGGAAATATGTTATGGAATTCTGTATTAC 857
Query 806 TGTCATATGCAGCTGACTTTAAGATGAAAAGCTTGCAGAGAGAGTTTATTGGAATGCTTG 865
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TGTCATATGCAGCTGATTTTAAGATGAAAAGCTTGCAGAGAGAGTTTATTGGAATGCTTG 917
Query 866 ATGCGGGTTTCTCTCCTGACCTTACCACCTTTAATATCCGCGCCCTCGCGTTTTCTAGAA 925
|||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct 918 ATGCGGGTTTCTCTCCTGACCTTACCACCTTTAACATTCGCGCTCTTGCGTTTTCTAGAA 977
Query 926 TGGCTCTTTTCTGGGATATACATCTCACTCTTGAACATATGAGACGTTTGAACATTGTTC 985
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TGGCTCTCTTCTGGGATCTACATCTCACTCTTGAACATATGAGACGTTTGAACATTGTTC 1037
Query 986 CAGATCTTGTGACTTTCGGATGTGTGGTCGATGCATACATGGATAAGCGACTAGCAAGAA 1045
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1038 CGGATCTTGTGACTTTCGGATGTGTTGTCGATGCATATATGGATAAGCGACTAGCGAGAA 1097
Query 1046 ATTTGGAGTTTGTATACAACCAAATGAA-CTTGGACGATTCTCCTGTTGTCTTAACTGAT 1104
||||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||
Sbjct 1098 ATTTGGAGTTTGTATACAACCGAATGAATCT-GGACGATTCTCCTCTTGTCTTAACTGAT 1156
Query 1105 CCACTTGCATTTGAAGTACTGGGGAAAGGGGATTTCCATCTTAGCTCAGAAGCTGTTTTG 1164
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1157 CCACTTGCATTTGAAGTTCTGGGGAAAGGGGATTTCCATCTTAGCTCGGAAGCTGTTTTG 1216
Query 1165 GAGTTCAGTCCACGGAAAAACTGGACGTATAGAAAGCTAATTGGAGTTTATCTGAAGAAA 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1217 GAGTTCAGTCCACGGAAAAACTGGACGTATAGAAAGCTAATTGGAGTTTATCTCAAGAAA 1276
Query 1225 AAGTTGCGGAGAGACCAGATTTTCTGGAATTACTAG 1260
||||||||||||||||||||||||||||||||||||
Sbjct 1277 AAGTTGCGGAGAGACCAGATTTTCTGGAATTACTAG 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5