BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484768
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42725.1 | Symbols: | Putative membrane lipoprotein | chr3:... 846 0.0
> AT3G42725.1 | Symbols: | Putative membrane lipoprotein | chr3:14842900-14843707
REVERSE LENGTH=808
Length=808
Score = 846 bits (458), Expect = 0.0
Identities = 567/620 (91%), Gaps = 5/620 (1%)
Strand=Plus/Plus
Query 1 AAAA-ATCAATGGCTTCTTTTCACAGATTGTTATGTTTGTTCCAAAACATTCTTGTATCG 59
|||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 9 AAAACATCAATGGCTTCTTTTCACAGAAAGTTATGTTTGTTCCAAAACATTCTCGTATCG 68
Query 60 TGTCTGAATTTCACACTCCTCCTCCTCTCCCTCTGTTCTTTCGTACCAATCATTCTTCTT 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TGTCTGAATTTCACTCTCCTCCTCCTCTCCCTCTGTTCTTTCGTACCAATCATTCTTCTT 128
Query 120 AGAAACCCTCCAACTTCACTTGGTTTAGCCTTCATCGCGGTCTCTCTCGTATCTCTGATC 179
|||||||||||||||||||| |||||||||||| |||| ||||| ||||| |||||||||
Sbjct 129 AGAAACCCTCCAACTTCACTCGGTTTAGCCTTCCTCGCAGTCTCACTCGTCTCTCTGATC 188
Query 180 TCCTCTTTTGGTGGTGCCTCTTCGCACCAATCTCGAGCCTGTTTCATTGTTCGAATCACC 239
|||||||| ||| ||||||||||||||||||||||| | |||||||| | || || ||
Sbjct 189 TCCTCTTTCGGTAGTGCCTCTTCGCACCAATCTCGATCATGTTTCATCGCGCGGATAACG 248
Query 240 CTTCATGTTTCCTCATTGACGGGTCAACTAATGGCAGTTTTAATGTTGTTTAGTAGAGAG 299
||||||||||||||| |||||||||| | || |||||||||||||||||||||||||||
Sbjct 249 CTTCATGTTTCCTCACTGACGGGTCAGTTTATTGCAGTTTTAATGTTGTTTAGTAGAGAG 308
Query 300 AAACAGAGTCTTGCTTTGCTGATATCGCCTCGAGACCCAAGAGAGGCTAAAGCTTTAGTT 359
|||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 309 AAACAGAGTCTTTCTTTGCTGATATCGACTCGAGACCCTAGAGAGGCTAAAGCTTTGGTT 368
Query 360 AG-GATAGAATGTGGTGTTTTCATGGCGATGATTCCGTTACAGATGATGGTTCTAGTGCT 418
|| | ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 369 AGAG-TAGAATGTGGTGTTTTCGTGGCGATGATTCCGTTACAGATAATGGTTCTAGTGCT 427
Query 419 GGCTTGTGTGTTGCATTGTTATTGGGTTAGAGAGTTCCAAGGGTTAGAAGTTGAGAGTGA 478
||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 428 GGCTTGTTTGTTACATTGTTATTGGGTTAGAGAGTTCGAAGGGTTAGATGTTGAGAGTGA 487
Query 479 AGATTCTTTTAGAAGAAAATGTAACCGAAGATTCTCGACCGTTGAAGAAGCTACTGGTTC 538
||||||||||||||||||||||||||||||| ||||||||| |||||| | ||| ||||
Sbjct 488 AGATTCTTTTAGAAGAAAATGTAACCGAAGAGTCTCGACCGCTGAAGATGGGACTAGTTC 547
Query 539 GGATGTCAAAGAAA-TGGAATTGGAAGAGAAAACGAATGCGAAACATGTTCAGTGGGTCA 597
|||| | ||||||| |||| ||||| ||||| | ||||| |||||||||||||||||| |
Sbjct 548 GGATTT-AAAGAAAATGGAGTTGGACGAGAAGATGAATGTGAAACATGTTCAGTGGGTTA 606
Query 598 AAACAGATTTTGAAGGTTAA 617
|||||||||| |||||||||
Sbjct 607 AAACAGATTTCGAAGGTTAA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5