BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484769
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42790.1 | Symbols: AL3 | alfin-like 3 | chr3:14877958-14879... 1589 0.0
AT5G20510.1 | Symbols: AL5 | alfin-like 5 | chr5:6939813-694290... 520 1e-146
> AT3G42790.1 | Symbols: AL3 | alfin-like 3 | chr3:14877958-14879781
REVERSE LENGTH=1086
Length=1086
Score = 1589 bits (860), Expect = 0.0
Identities = 980/1035 (95%), Gaps = 20/1035 (2%)
Strand=Plus/Plus
Query 1 TAGAAGAAAAACAAGATCGGGTCTCGTCACGGTCCACGCCGCAGCTTTTTCTTCGTCTTC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 34 TAGAAGAAAAACAAGATCGGGTCTCGTCACGGTCCACGGCGCAGCTTTTTCTTCGTCTTC 93
Query 61 TTCCATTATTCTATT-TCTCTGAGAGATTCTCTCTGAGTTTC-----T-GA--GATCG-A 110
||| ||||||||||| ||||||||||||||||||| ||||| | || || || |
Sbjct 94 TTCAATTATTCTATTCCCTCTGAGAGATTCTCTCTGCGTTTCTTAGATCGAGCGAGCGAA 153
Query 111 GC--GAGATCATGGAAGGTGGAGCTGCTCTTTACAATCCTCGAACTGTCGAAGAAGTTTT 168
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 154 GCGAGAGATCATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTT 213
Query 169 CAAGGATTTCAAAGGTCGTCGTGCTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGA 228
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 214 CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGA 273
Query 229 GTTTTACCAACAATGTGACCCTGAAAAGGAGAATCTTTGTTTGTATGGGTTACCGAATGA 288
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 274 GTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGA 333
Query 289 AGAATGGGAAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAGCTACCAGAGCCAGCTCT 348
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 334 AGAATGGGAAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAGTTACCAGAGCCAGCTCT 393
Query 349 TGGCATCAACTTTGCTAGAGATGGGCTCTCTGAAAAAGAATGGCTTTCTCTTGTTGCTAT 408
||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 394 TGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTAT 453
Query 409 TCACAGTGATGCTTGGTTACTCTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCA 468
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 454 TCACAGTGACGCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCA 513
Query 469 CAAGGAGGAAAGGAAGCGCTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGT 528
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGT 573
Query 529 AGTGACTGGAATGGCCAAAGCGAAGGACAAGTCATCTGCTGCCAATCAAAACGGAAACAA 588
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 574 AGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAA 633
Query 589 ATCCAAGTCGAACTCAAAAGTTAGAACTTCAGAAGGCAAAAGCTCAAAGACCATGCAGCC 648
||||||||| ||||| ||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 634 ATCCAAGTCTAACTCTAAAGTTAGAACTTCAGAGGGAAAAAGCTCAAAGACCAAGCAGCC 693
Query 649 AAAAGAGGAGGACGAAGGAATAGATGAAGATGATGAGGATGACCACGGCGAAACCCTTTG 708
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 694 AAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTG 753
Query 709 TGGAGCCTGTGGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TGGAGCCTGTGGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGA 813
Query 769 GAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGCATATCAAACA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGCATATCAAACA 873
Query 829 ATACAAGTGCCCTTCATGCAGCAACAAAAGAGCACGAGCTTAAA--TGTTCTATTGTAGT 886
||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||
Sbjct 874 ATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCTTAAAAATGTTGTATTGTAGA 933
Query 887 GAATAGCCTGTAGTGACAACTCTCACTACCCTC--T--GTCTTTATTTGGCTAGTCTT-- 940
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 934 GAATAGCCTGTAGTGACAACTCTCACTACCCTCGATCTGTCTTTATTTGGCTAGTCTTTT 993
Query 941 AGCGCTTTATTGGCCATAACAGCTTGGGCCTATTTCTCTGTATAATTGGTTTGATTTTGC 1000
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AGCTCGTTATTGGCCATAACAGCTTGGGCCTATTTCTCTGTATAATTGGTTTGATTTTGC 1053
Query 1001 AACTGAGaaaaaaaa 1015
|||||||||||||||
Sbjct 1054 AACTGAGAAAAAAAA 1068
> AT5G20510.1 | Symbols: AL5 | alfin-like 5 | chr5:6939813-6942908
REVERSE LENGTH=1023
Length=1023
Score = 520 bits (281), Expect = 1e-146
Identities = 635/801 (79%), Gaps = 44/801 (5%)
Strand=Plus/Plus
Query 118 CATGGAAGGTGGAGCTGCTCTTTACAATCCTCGAACTGTCGAAGAAGT-TTTCAAGGATT 176
||||||||| ||| |||| | |||| |||||||||||||||||||| |||| | ||||
Sbjct 62 CATGGAAGGAGGAACTGCGCACTACAGCCCTCGAACTGTCGAAGAAGTCTTTCGA-GATT 120
Query 177 TCAAAGGTCGTCGTGCTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGAGTTTTACC 236
| || || ||||| |||| ||| || ||||||||||||| ||||| |||| |||| ||
Sbjct 121 TTAAGGGCCGTCGAGCTGGCATCATCCAAGCTCTCACCACTGATGTGGAAGATTTTTTCC 180
Query 237 AACAATGTGACCCTGAAAAGGAGAATCTTTGTTTGTATGGGTTACCGAATGAAGAATGGG 296
| ||||| |||||||| ||| ||||||| || |||||||| || || ||||||| ||||
Sbjct 181 AGCAATGCGACCCTGAGAAGCAGAATCTCTGCTTGTATGGATTCCCAAATGAAGTGTGGG 240
Query 297 AAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAGCTACCAGAGCCAGCTCTTGGCATCA 356
|||| || ||||||||||||||||||||||||||||| || || || || || ||||| |
Sbjct 241 AAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCCGAACCTGCACTCGGCATTA 300
Query 357 ACTTTGCTAGAGATGGGCTCTCTGAAAAAGAA--TGGCTTTCTCTTGTTGCTATTCACAG 414
||||||| ||||||||| | | | ||| ||| ||||||||||| |||||| | |||||
Sbjct 301 ACTTTGCCAGAGATGGGATG-CAGGAAA-GAAACTGGCTTTCTCTCGTTGCTGTCCACAG 358
Query 415 TGATGCTTGGTTACTCTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACA-AGG 473
|||||| |||||||| ||||| || ||||||||||| ||||| ||| |||| | | ||
Sbjct 359 TGATGCGTGGTTACTTTCTGTGTCTTTTTACTTTGGTTCAAGATTTGGTTTCGATAGAGC 418
Query 474 AGGAAAGGAAGCGCTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGTAGTGA 533
| | |||||||||||||| | ||||| ||||| ||||||||| ||| |||||| || |
Sbjct 419 TG-ACAGGAAGCGCTTGTTTAGTATGATAAATGAGGTTCCTACTGTATATGAAGTTGTAA 477
Query 534 CTGGAA-TGGCC-A-AAGCGAA----GGACAA-GTCATCTGCTGCCAATCAAAACGGAAA 585
|||||| || | | |||| || ||| || | | ||| | || |||||||| || ||
Sbjct 478 CTGGAAATG-CAGAGAAGCAAACAAAGGA-AATGCCCTCTTCAGCAAATCAAAATGGCAA 535
Query 586 CAAATCCAAGTCGAACTCAAAAGTTAGAACTTCAGAAGGCAAAAGCTCAAAGACCATGCA 645
|| ||||||||| || |||||| | ||| || |||| | ||||| |||||||| || ||
Sbjct 536 CAGATCCAAGTCAAATTCAAAAATGAGAGGTTTAGAAAGTAAAAGTTCAAAGACGATACA 595
Query 646 -GCCAAA-A-GAGGA-G--G-AC--GA---AG--GAAT---A-GATGAAGATGATGAGGA 687
||||| | ||||| | | | || || ||| | || ||||| ||||||||
Sbjct 596 TGCCAAGGATGAGGAAGAAGGATTAGAGTTAGAAGAAGGGGAAGAGGAAGAGGATGAGGA 655
Query 688 TGA---C---CACGGCGAAACCCTTTGTGGAGCCTGTGGAGACAG-TGATGGTGCTGATG 740
||| | ||||| |||||||| |||||||| |||||||| | | ||| | ||||||
Sbjct 656 TGAAGACGAACACGGTGAAACCCTATGTGGAGCATGTGGAGATAACT-ATGCTTCTGATG 714
Query 741 AATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCA 800
|||||||||| ||||||||| | || ||||| |||||||| || |||||||||||||||
Sbjct 715 AATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGGAGTGTGTGAAGATCA 774
Query 801 CTCCAGCTAGAGCTGAGCATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAG 860
||||||||||||| ||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct 775 CTCCAGCTAGAGCGGAGCATATCAAGCATTACAAGTGCCCTACTTGCAGCAACAAAAGAG 834
Query 861 CACGAGCTTAAATGTTCTATT 881
||||| | || ||||| ||||
Sbjct 835 CACGACCCTAGATGTTTTATT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5