BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484770
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42960.1 | Symbols: ATA1, ASD, TA1 | TAPETUM 1 | chr3:150186... 1315 0.0
> AT3G42960.1 | Symbols: ATA1, ASD, TA1 | TAPETUM 1 | chr3:15018695-15019685
REVERSE LENGTH=888
Length=888
Score = 1315 bits (712), Expect = 0.0
Identities = 806/853 (94%), Gaps = 0/853 (0%)
Strand=Plus/Plus
Query 1 GATCGTCAAGAGACAGTAAACCTAAAATGGCGAACTCAAACAAGAGATTATTCCAAAAGG 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| | ||||
Sbjct 4 GATCGTCAAGAGACAGTAAACCTAAAATGGCGAACTCAGACAAAAGATTATTCGAGAAGG 63
Query 61 TAGCTATAATAACCGGAGGAGCAAGAGGGATCGGAGCAGCCACGGCGAGACTGTTCACGG 120
||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
Sbjct 64 TAGCTATAATAACCGGAGGAGCAAGAGGGATAGGAGCGGCCACGGCGAGATTGTTCACAG 123
Query 121 AGAACGGTGCATATGTCATAGTCGCGGATATCCTTGAGAATGAAGGCATCCATGTCGCGG 180
|||| || || ||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 124 AGAATGGCGCGTATGTGATAGTCGCGGATATCCTTGAGAATGAAGGCATCCTTGTGGCGG 183
Query 181 AATCCATCGGTGGGTGTTACGTTCATTGTGATGTGTCGAAGGAGGCTGACGTTGAGGCGG 240
|||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 184 AATCGATCGGTGGGTGTTACGTTCATTGTGACGTATCGAAGGAGGCTGATGTTGAGGCGG 243
Query 241 CAGTGGAGCTAGCTATGAGACGTAAAGGTAGACTAGACGTGATGTTCAACAACGCTGGGA 300
||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 244 CAGTGGAGCTAGCAATGAGACGTAAAGGTAGACTAGATGTGATGTTCAACAATGCCGGGA 303
Query 301 TGACGCTTAACGAAGGTAGTATCATGGAGATGGACGTGGACATGGTTAACAAACTTGTTT 360
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 304 TGTCGCTTAACGAAGGTAGTATCATGGGGATGGACGTGGACATGGTTAACAAACTTGTCT 363
Query 361 CGGTCAATGTCAATGGCGTTTTGCATGGCATCAAACATGCCGCTAAGGCCATGATCAAAG 420
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 CGGTTAATGTCAATGGTGTTTTGCATGGTATCAAACATGCCGCTAAGGCCATGATCAAAG 423
Query 421 GGGGAGGAGGAGGATCAATAATATGCACATCGAGCTCATCAGGGGTAATGGGAGGACTTG 480
||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 424 GGGGACGAGGAGGCTCGATAATATGCACATCGAGCTCATCAGGGCTAATGGGAGGACTTG 483
Query 481 GAGGGCATGCGTATACGCTCTCCAAAGGAGCCATCAACGGGCTGGTGAGGACAACGGCAT 540
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 484 GAGGACATGCGTATACGCTCTCCAAAGGAGCCATCAACGGGGTGGTGAGGACAACGGCGT 543
Query 541 GCGAGCTTGGGTCTCACGGCATCCGTGTGAACAGCATCTCTCCTCATGGAGTTCCCACTG 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 544 GCGAGCTTGGGTCTCACGGCATCCGTGTGAATAGCATCTCTCCTCATGGAGTTCCCACTG 603
Query 601 ACATCTTGGTTAATGCGTACCGTAAGTACCTTAACAATGACAAACTCGACGTTGCTGAGG 660
||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||
Sbjct 604 ACATCTTGGTTAATGCGTACCGTAAGTTCCTTAACCATGACAAACTCAACGTCGCTGAGG 663
Query 661 TCACCGACATTGTGGCTGAGAAAGGGAGTTTGCTTACCGGAAGAGCCGGTACTGTGGAGG 720
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 664 TCACCGACATTATTGCTGAGAAAGGGAGTTTGCTGACCGGAAGAGCCGGTACTGTGGAGG 723
Query 721 ACGTGGCTCAAGCAGCTTTGTTTCTCGCAAGCCAAGAATCGTCGGGGTTCATTACCGGAC 780
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 724 ACGTAGCTCAAGCAGCTTTGTTTCTTGCAAGCCAAGAATCGTCGGGGTTCATTACCGGAC 783
Query 781 ATAACCTGGTTGTTGATGGTGGTTACACATCTGCCACTAGTACCATGAGATTTATCTACA 840
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 784 ATAACTTGGTTGTTGATGGTGGTTACACATCTGCCACTAGTACTATGAGATTTATCTACA 843
Query 841 ACTAGTTTTCGTT 853
|||||||||||||
Sbjct 844 ACTAGTTTTCGTT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5