BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484775
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1437 0.0
> AT3G42800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G54200.1);
Has 853 Blast hits to 340 proteins in 98 species: Archae -
0; Bacteria - 94; Metazoa - 145; Fungi - 62; Plants - 95; Viruses
- 0; Other Eukaryotes - 457 (source: NCBI BLink). | chr3:14905230-14907035
FORWARD LENGTH=1563
Length=1563
Score = 1437 bits (778), Expect = 0.0
Identities = 958/1044 (92%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 1 CTCATGGCATTTCCTCAGAAAAAACGAACACCTTCTTTCTCTTCCTCTGTTCTTGACTCT 60
|||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 362 CTCATGGCTTTTCCTCAGAGAAAACGAACACCTTCTTTCTCTTCTTCTGTTCTTGACTCT 421
Query 61 GTTTACCGTTCTATCGACGAATCCGACGGTCTCCAAAGTGACCTAAGAGGATCCATCAAC 120
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 422 GTTTACCGTTCTATCGACGAATCTGACGGTCTCCAAAGTGACCTAAAAGGATCCATCAAC 481
Query 121 GAAAATGTATCTTCATCATCATCTTCACCTTCACCAAACAAGAAAGACGACAAGCTTACA 180
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 482 GAAAATGTATCTTCATCATCATCCTCACCATCACCAAACAAGAAAGACGACAAGCTTACA 541
Query 181 ACTCTCCGGCGAGCAATCATTGACGAAGAACACTGGCTTTACGCCCGAAGCAGCACCACT 240
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 542 ACTCTAAGGCGAGCAATCATGGACGAAGAACACTGGCTTTACGCCCGAAGCAGCACCACT 601
Query 241 ACCACTAATTCCTCGGATTCCTCTGCTTTTTCCTCTTCCGAGGCAGAGTCATATCGAACA 300
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 602 ACCACTAACTCCTCTGATTCCTCTTCTTTTTCCTCTTCCGAGGCAGAGTCATATCGAACA 661
Query 301 AAGAGAAGGTTGAGAAAGCTTGCGGAACAAGGTAATAGATCAGGTGATGAGAGACAGAGA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 AAGAGAAGGTTGAGAAAGCTTGCGGAACAAGGTAAAAGATCAGGTGATGAGAGACAGAGA 721
Query 361 ACAAAGAGAACGTCGGTACTAGATAATGATAG-A--TTCATCTCCAAGTCGGATAATGAT 417
|||||||||||| | || | || || ||||| | || | |||||||| ||| |||||
Sbjct 722 ACAAAGAGAACG--G-TAATGGACAACGATAGTAGATTGTTTTCCAAGTCCGATGATGAT 778
Query 418 AAAAAGCTTAAAGCCATGACGATGATCGAGGAGATAAAGAGACCGAAGCAGCCAGTGTCT 477
|| |||| ||||||| ||| ||| || |||||| |||||||| |||||||||||||||||
Sbjct 779 AAGAAGCCTAAAGCCGTGAAGATAATTGAGGAGCTAAAGAGATCGAAGCAGCCAGTGTCT 838
Query 478 CCTGGAGCGCGTCTCACCAGCTTCCTCAACTCCATCTTTCAATCTAACGCCAAGAAAGTG 537
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 839 CCTGGAGCGCGTCTCACTAGCTTCCTCAACTCGATCTTCCAATCTAACGCCAAGAAAGTG 898
Query 538 AAGCTTTGTTCTGTCGGTAAGACCACAGACGTCAAGTCCTCTTCCTCATCAAAGTCTTGC 597
||||||||||||||||||||||| |||||||| |||||||| |||||| || |||||||
Sbjct 899 AAGCTTTGTTCTGTCGGTAAGACAACAGACGTTAAGTCCTCATCCTCA--AA-GTCTTGC 955
Query 598 TTCAGTCGAACAAGATATAAAACCGacaacaacaacaacaacTGCCAGAAGTTGGAAAGA 657
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 TTCAGTCGAACAAGAAATAAAACCGACAACAACAACAACAACTGCAAGAAGTTGGAAAGG 1015
Query 658 TCTATCAGATTCTATCCCGTTAGAGTAACTATCGATGGAGACTACAGAGACTCTGTTCAC 717
||||| ||||||||||| ||||||||||| || |||||||||| |||||||| || |||
Sbjct 1016 TCTATAAGATTCTATCCGGTTAGAGTAACCATTGATGGAGACTGCAGAGACTATGCTCAA 1075
Query 718 AAA-AGCATTACTCGCGAGAGAAAACCAATTCCAGAATTTACTGCCAAGAAGAGTATCAA 776
||| | ||||||||||| ||| |||||||||||||||||||| || ||||||||| ||||
Sbjct 1076 AAACA-CATTACTCGCGTGAGGAAACCAATTCCAGAATTTACCGCTAAGAAGAGTGTCAA 1134
Query 777 AGAGGAGATTAAAACCAAAGATCATCACACTGAGTTTACTTGCATCACAAGAAAGATCGG 836
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1135 AGAGGAGATTAAGACCAACGATCATCACACTGAGTTTACTTGCATCACAAGAAATATAGG 1194
Query 837 TTTGAAGGATTTTGTGAGAAGTAACAAATATGAAGGTAAAGAAGATGAGGATGATGTTTG 896
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1195 TTTGAAGGATTTTGTGAGAAGTAACAAATATGAAGGTAAAGAAGAGGAGGAGGATGCTTG 1254
Query 897 GAGTTACTCGAGTTCTGATCTGTTCGAGCTCGATAGTTACCGGATCGATATGGGGCGGTA 956
|||| |||| ||||| |||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 1255 GAGTCACTCAAGTTCGGATCTGTTTGAGCTTGATAGTTACCGGATCGGTATGGGGCGGTA 1314
Query 957 CTTAAAAGAACTTCCGGTCTATGAAACTACTGATTTCAAGA-TAAATCAAGCTATCGCTA 1015
||||||||||||||| ||||||||||||||||||||||||| ||| |||||| || ||||
Sbjct 1315 CTTAAAAGAACTTCCAGTCTATGAAACTACTGATTTCAAGACTAA-TCAAGCCATTGCTA 1373
Query 1016 -AAGGCTTGGTTTTGTAGTCTTTT 1038
||| |||| ||||||||| ||||
Sbjct 1374 GAAG-CTTGCTTTTGTAGTGTTTT 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5