BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484787
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43120.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1227 0.0
> AT3G43120.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:15094083-15095512 FORWARD LENGTH=849
Length=849
Score = 1227 bits (664), Expect = 0.0
Identities = 732/764 (96%), Gaps = 7/764 (1%)
Strand=Plus/Plus
Query 3 AAAAAGAAAAATCTTCCGGAGCTGCTAACAtttttt-tGCATGGCGTTTCCTCTTCGTGT 61
||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct 36 AAAAAAAAAAATCTTCCGGAGCTTCTAACTTTTTTTCTGCATGGCGTTTCCTCTTCGTGT 95
Query 62 CTAAGAGCGCTTCATTTCTGTTTCCTCTTCTGCTTGCCTGGGAAGATATATTATATCCTT 121
|||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 96 CTAAGAGCGCTTCATTTCTGTTTCCTTTTCTGCTTGCCTGGGTAGATATTTTATATCCTT 155
Query 122 AAAAAGGAGAAAATGGATGAAAACAACGCGGCAAAGTTAACCGGGATCAAGCAAATTGTG 181
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 156 -AAAAGGAGAAAATGGATGAAAACAACGCGGCAAAGTTAACCGGGATCAAGCAGATTGTG 214
Query 182 AGACTAAAGGAGATTCTTCAAAAATGGCAAACTGTCACAATAGGTTCAAAGTCAGATGAT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 AGACTAAAGGAGATTCTTCAAAAATGGCAAACTGTCACAATAGGTTCAAAGTCAGATGAT 274
Query 242 GGCGAGTTGGGAGCTA-AAAAGCACACAGCTATCATTTCACCGGTTATCAACAAGAGACT 300
|| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 275 GGAGAGTTGGGAGCTAGAAAA-CACACAGCTATCATTTCACCGGTTATCAACAAGAGGCT 333
Query 301 ATTGGATTTGAAGACTTGTGACTCGGACGAGGAAACTACTTGCCATAGCCCTGAGTCACC 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 334 ATTGGATTTGAAGACTTGTGACTCGGACGAGGAAACTACTTGCCAAAGCCCTGAGCCACC 393
Query 361 GCCTGATGTCCCTAAAGGATATTTGGCGGTTTATGTTGGACCCGAGCTCCGGAGATTTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GCCTGATGTCCCTAAAGGATATTTGGCGGTTTATGTTGGACCCGAGCTCCGGAGATTTAT 453
Query 421 CATACCCACAAACTTTCTTAGCCATTCTTTGTTCAAGGTCTTGCTCGAGAAGGCTGAGGA 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 454 CATACCCACAAACTTTCTTAGCCATTCTTTGTTCAAGGTCTTGCTTGAGAAGGCTGAGGA 513
Query 481 AGAGTATGGATTTGATCACAGCGGTGCGTTAACCATACCTTGTGAAGTTGAGACTTTCAA 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 514 AGAGTATGGATTTGATCACAGCGGTGCGTTAACCATTCCTTGTGAAGTTGAGACTTTCAA 573
Query 541 GTACTTACTTAAGTGCATTGAGAACCATCCTAAAGATGACACCTCGGCTGGAGATTTAAT 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 574 GTACTTACTTAAGTGCATTGAGAACCATCCTAAAGATGACACCTCGGCTGAAGATCCAGT 633
Query 601 AGAAACGGAAGATTAAATAATAACACATTACCTA-TATAAATTCTTCTTTTCCTCTTTTA 659
|||||||||||| ||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct 634 AGAAACGGAAGAGTAAATAATAACACAT-AC-TAATATAAACTCTTCTTTTCCTCTTTTA 691
Query 660 TTACCATCCCCCTTTAAACTTGTATTAGGGCTGATGACACTCCCAATGGTAATTGTAAAA 719
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 692 TTACCATCCCCCTTTAAACTCGTATTAGGGTTGATGACACTCCCAATGGTAATTGTAAAA 751
Query 720 TCAGtttctctttgtatttttctaattatttttcatcttcttct 763
||||||||||||||||||||||| | |||||||| || ||||||
Sbjct 752 TCAGTTTCTCTTTGTATTTTTCTGACTATTTTTCTTCCTCTTCT 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5