BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484792
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43230.1 | Symbols: | RING/FYVE/PHD-type zinc finger family... 2375 0.0
> AT3G43230.1 | Symbols: | RING/FYVE/PHD-type zinc finger family
protein | chr3:15207367-15209825 FORWARD LENGTH=1864
Length=1864
Score = 2375 bits (1286), Expect = 0.0
Identities = 1582/1716 (92%), Gaps = 56/1716 (3%)
Strand=Plus/Plus
Query 1 GAATAAAATATTCCCC--GGCGCCGTGTTCTTG--G-TCGCTACTTATCTTCTTCTTCAA 55
|||||||||||||||| ||||||||||||||| | | |||||||||||||||||||||
Sbjct 22 GAATAAAATATTCCCCGAGGCGCCGTGTTCTTGTTGCTTGCTACTTATCTTCTTCTTCAA 81
Query 56 TCCCATAAATCGGAATTGC-TATTTTTCTTAACCTAATTCGTTTCTTCGCGATCAAAGCA 114
|||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 82 TCCCATAAATCGGATTTGCAAAATTTTCTTAACCTAATTCGTTTCTTCGCGATCAAACCA 141
Query 115 CAGGTTTTTCAATTTTAGTGAATTTTCA-ATTTTAAGGCATGGCTACTCTCAACGGAAAA 173
||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 142 CAGATTTTTCAATTTTAGTGAAGTTTCATTTTTTAAGGCATGGCTACTCTCAACGGAAAA 201
Query 174 GTTTCTCCGTATTCTGAAGAAAACATCAAATTCAAGTatgatg---at--t-atgatgat 227
| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 202 GCTTCTCCGTATTCTGAAGAAAACATCAAATTCAAGTATGATGATTATGATGATGATGAT 261
Query 228 gatgatgatgat-g-a-t-g--GT--TA-------T-G----G-AGATGGACCTAAATGG 266
|||||||||||| | | | | || || | | | ||||||||||||||||
Sbjct 262 GATGATGATGATGGTAGTGGTAGTGGTAGTGGTGGTGGTTATGAAGATGGACCTAAATGG 321
Query 267 TCTGTTCAATCAAACCCCACAAAGAAGGAACCGGAGTATCCGATTATCGACTCTGGAGAT 326
||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 322 TCTGTTCAATCAATCCCCACAAAGAAAGAGGTGGAGTATCCGATTATCGACTCAGGAGAT 381
Query 327 TATGTTGATGACGGATATGATTCAGCTGACGAGCTCTCT------ACGA---CGCCGATT 377
|| ||||| ||||||||||||||| | | |||||||||| |||| ||||||||
Sbjct 382 TACGTTGACGACGGATATGATTCATCCGGCGAGCTCTCTACAACGACGACGCCGCCGATT 441
Query 378 CAAGGAAATG-GTAAACCTGAAGTAAACTTGAAAAACGTTTTAACTGGGTTGATTGCTAT 436
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 442 CAAGGAAATGAG-AAACCTGAAGTTAACTTGAAAAACGTTTTAACTGGGTTGATTGCTAT 500
Query 437 TGTTACCGGGCGGAACAAGGACGTAAGGGGTTCGTTAGATCAGAAAATCCCGTCTTCGAA 496
|||||| || ||||| | | | || | ||||||||||||||| ||||||||||||
Sbjct 501 TGTTACTGGACGGAA-TA--A-G-AA----TCCGTTAGATCAGAAAAACCCGTCTTCGAA 551
Query 497 TGTTTCGTTTCTTGGCTCTGGCAAGAACGGAGATACTTATGTTCACTCGTCTGTTTACAT 556
||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||
Sbjct 552 TGTTTCGTTTCTTGGCTCTGGCACGAACGGGGATACTTTTGTTCATTCGTCTGTTTACAT 611
Query 557 ACCGAGTGCTCCGCCTCTACTTGAACCTAGTGGGATTAATTACAGTGTTTACAAGGAGTT 616
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 612 ACCGAGTGCTCCGCCTCTACTTGAACCTAGTGGGATAAACTATAGTGTTTACAAGGAGTT 671
Query 617 GCTTGAAGCTGAACCTCCTGAGTGGCTACCTGATAGTTTAGCTACTACTTGCATGCAGTG 676
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 672 GCTTGAAGCTGAACCTCCTGAGTGGCTACCTGATAGTTTAGCTAGTACTTGCATGCAGTG 731
Query 677 TTCTACTCCTTTTACTGCAATCACGTGCGGTAGACATCATTGTCGGTTCTGCGGAGGGAT 736
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 732 TTCTACTCCTTTTACTGCAATTACGTGTGGTAGGCATCATTGTCGGTTCTGCGGAGGGAT 791
Query 737 ATTTTGTAGGAACTGTTCGAAAGGGAGGTGTTTGATGCCTAGTCGGTTTCGGGAAAGGAA 796
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 792 ATTTTGTAGAAACTGTTCGAAAGGGCGGTGTTTGATGCCTAGTCGGTTTCGGGAAAGGAA 851
Query 797 TCCTCAGAGAGTGTGTGATTCTTGCTACGAGAGGCTTGATCCTTTGCAATGTGTTCTTAT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TCCTCAGAGAGTGTGTGATTCTTGCTACGAGAGGCTTGATCCTTTGCAATGTGTTCTTAT 911
Query 857 TAACTCTATTAGTAATGCTATGCAAGTAGCCAAGCATGATGTTGTGGATTGGACTTGCTC 916
||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||
Sbjct 912 TAACTCTATTAGTAATGCTGTGCAAGTTGCAAAGCATGATGTTGTTGATTGGACTTGCTC 971
Query 917 AAGAGGATGGTTGAATCTCCCTGTTGGTCTATCCATGGAAGATGAGATATACAAGGCAT- 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 972 AAGAGGATGGTTGAATCTCCCTGTTGGTCTATCCATGGAAGATGAGATATACAAGGC-TG 1030
Query 976 CTAATACGTTGAGAGGTTACTGCCAGGTTGCAAGACTAGACCCTGAGAAATCCATACCGC 1035
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1031 CTAATACGTTGAGAGGTTACTGCCAGGTAGCAAGACTAGACCCTGAGAAATCCATACCGC 1090
Query 1036 ATGCAGTTCTTAGTCGAGCTAAAGGTTTGGCAATCATAACGGTTGCTAAGGCTGGGGTTT 1095
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1091 ATGCTGTTCTTAGTCGAGCTAAAGGTTTGGCAATCATAACGGTTGCCAAGGCTGGGGCTT 1150
Query 1096 TACTGTCATACAAACTCGGGACTGGTCTGGTAATATCTCGGAGACCAGACGGGTCATGGT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TACTGTCATACAAACTCGGGACTGGTCTGGTAATATCTCGGAGACCAGACGGGTCATGGT 1210
Query 1156 CTGCTCCATCTGCCATACTATCAGTAGGTCTTGGATGGGGTGCTCAGATTGGAGGTGAGT 1215
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1211 CTGCTCCATCTGCCATACTATCAGTAGGTCTTGGATGGGGTGCACAGATTGGAGGTGAGT 1270
Query 1216 TGATGGACTTCATAATAGTGCTGCATGATGTGAAAGCGGTGAAGACGTTCTGCAGCAGAA 1275
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 1271 TGATGGACTTCATAATAGTGCTTCATGATGTGAAAGCCGTGAAGACATTCTGCAGCAGAA 1330
Query 1276 TGCATTTCTCTCTAGGCGCGGGATGCAGTGCAGCAGCAGGACCTATCGGGAGAGTGCTGG 1335
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1331 TGCACTTCTCTCTAGGCGCGGGATGCAGTGCAGCAGCAGGGCCTATCGGGAGAGTGTTGG 1390
Query 1336 AAGCTGACCTTCGTGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGTAGCA 1395
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1391 AGGCTGACCTTCGAGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGCAGCA 1450
Query 1396 AAGGGGCATTTGTGGGAGTATCTCTTGAAGGAAATGTGGTGGCCACACGAAGGGACATGA 1455
||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||
Sbjct 1451 AAGGGGCATTTGTGGGAGTATCTCTAGAAGGAAATCTGGTGGCAACAAGAAGGGACATGA 1510
Query 1456 ATGTAAAGTTCTATGGCGATCCATACCTAACCACAACAGACATTCTACTTGGGATGGTGG 1515
|||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1511 ATGTAAAGTTCTATGGTGATCCATACCTATCCACATCGGACATTCTACTTGGGATGGTGG 1570
Query 1516 ATCAACCGAAGGCAGCTGCACCGTTGTACACTGCCCTCAGGGACCTCTATGCTCGGTTGC 1575
||||||| |||||||||| |||||||||||| |||||| | || ||||||||||| ||||
Sbjct 1571 ATCAACCCAAGGCAGCTGAACCGTTGTACACCGCCCTCCGAGAGCTCTATGCTCGTTTGC 1630
Query 1576 GCCCATAATCTCCATTCACATTACAAACTACTCTTTGTATATAAACGCTTCTCAAATTCG 1635
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1631 GCCCGTAATCTCCATTCACATTACAAACTACGCTTTGTATATATACGCTTCTCAAATTCG 1690
Query 1636 TTACTATTTAAGTGTACATGTACATAAATTGTTTCT 1671
|| ||||| ||||||| |||||||||||||||||||
Sbjct 1691 TTTCTATTAAAGTGTAAATGTACATAAATTGTTTCT 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5