BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484797
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43430.1 | Symbols: | RING/U-box superfamily protein | chr3... 686 0.0
> AT3G43430.1 | Symbols: | RING/U-box superfamily protein | chr3:15354535-15355304
REVERSE LENGTH=770
Length=770
Score = 686 bits (371), Expect = 0.0
Identities = 480/533 (90%), Gaps = 6/533 (1%)
Strand=Plus/Plus
Query 1 CTCCAAGTTTTCACAATGACTTTCTTCATTGAAGACACTAGTCTCATCATCAGCCACGTT 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 29 CTCCAAGTTTTCACAATGACATTCTTCATCGAAGACACTAGTCTCATCATCAGCCACGTT 88
Query 61 CTATACAAAACGGCGA-TAATCATCGCCGTTTTACGATGGATATTCGCCTGGAGCCTCCG 119
|| ||||||||||| | | |||||| |||||||||||||||| || || |||| ||||||
Sbjct 89 CTCTACAAAACGGC-ACTTATCATCACCGTTTTACGATGGATCTTTGCATGGATCCTCCG 147
Query 120 TTACCGCTCCAGATCATTATCATCATCATCATCTCAATCCTCCTCTACTCCTT-TGATTT 178
||||||||| ||||| | ||||||||||||||||||||||||||| |||||| | ||||
Sbjct 148 TTACCGCTCAAGATCCTCCTCATCATCATCATCTCAATCCTCCTCTTCTCCTTCT-ATTT 206
Query 179 CATCACAAACAATCAAAGAAAGCCTCGCTGTAACGGCGTTCCGCGACGCGGTGGAGAGAT 238
|||||||||| |||||||||||||| || || | || ||||||||||||||||||||||
Sbjct 207 CATCACAAACCATCAAAGAAAGCCTAGCCGTGTCCGCTTTCCGCGACGCGGTGGAGAGAT 266
Query 239 CTCCCGCGACAATAAACGACACGTGCGCCGTGTGTCTAGGAGATCTTGAAGACGATGATG 298
|||||||| | |||||||||| ||| ||||||||||||||||||||||||||||| || |
Sbjct 267 CTCCCGCGGCGATAAACGACATGTGTGCCGTGTGTCTAGGAGATCTTGAAGACGAGGACG 326
Query 299 AAATCAGAGAGCTTAGGAATTGTAGC-CATGTTTTTCATCGTGATTGTATTGACCGGTGG 357
||||||||||||||||||| |||| | || || ||||||||||||||||||||||| |||
Sbjct 327 AAATCAGAGAGCTTAGGAACTGTA-CTCACGTGTTTCATCGTGATTGTATTGACCGATGG 385
Query 358 CTAGATTATGAATGTCGCGGTGGCGATGAGGATAACCACCGTACTTGTCCGCTATGTCGA 417
||||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 386 CTAGATTATGAATGTTGCGGCGGTGATGATGATAACCACCGTACTTGTCCCCTATGTCGA 445
Query 418 ACACCGTTGCTTCCGTCGTTCTCTGATTGCTCCACCGTTAATCAACCTAGCTGGGCCGTT 477
|| ||||||||||| || ||| |||||| ||| ||||||| |||| |||| ||||| |||
Sbjct 446 ACGCCGTTGCTTCCATCTTTCACTGATTACTCAACCGTTACTCAAACTAGTTGGGCTGTT 505
Query 478 GAACGACTTCTTTACCTCTTCGGCGACGATCTTCTTCCCTGAATTTTATTTTT 530
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 506 GAACGACTTCTTTACCTCTTCGGCGACGATCTTCTTCCCTGACTTTTATTTTT 558
Score = 126 bits (68), Expect = 2e-28
Identities = 80/86 (93%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 531 GAGGAGTAGAATAGGAAATATAAGAATGATTGATCTCAATTATACGAAAACGAACCAATT 590
|||| || ||||||||||||||||| ||||||||| ||||||||||||| |||| |||||
Sbjct 611 GAGGGGTCGAATAGGAAATATAAGAGTGATTGATCGCAATTATACGAAATCGAATCAATT 670
Query 591 TGATTTGATTGTATATACAAATGTTA 616
||||||||||||||||||||||||||
Sbjct 671 TGATTTGATTGTATATACAAATGTTA 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5