BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484797 Length=616 Score E Sequences producing significant alignments: (Bits) Value AT3G43430.1 | Symbols: | RING/U-box superfamily protein | chr3... 686 0.0 > AT3G43430.1 | Symbols: | RING/U-box superfamily protein | chr3:15354535-15355304 REVERSE LENGTH=770 Length=770 Score = 686 bits (371), Expect = 0.0 Identities = 480/533 (90%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 1 CTCCAAGTTTTCACAATGACTTTCTTCATTGAAGACACTAGTCTCATCATCAGCCACGTT 60 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 29 CTCCAAGTTTTCACAATGACATTCTTCATCGAAGACACTAGTCTCATCATCAGCCACGTT 88 Query 61 CTATACAAAACGGCGA-TAATCATCGCCGTTTTACGATGGATATTCGCCTGGAGCCTCCG 119 || ||||||||||| | | |||||| |||||||||||||||| || || |||| |||||| Sbjct 89 CTCTACAAAACGGC-ACTTATCATCACCGTTTTACGATGGATCTTTGCATGGATCCTCCG 147 Query 120 TTACCGCTCCAGATCATTATCATCATCATCATCTCAATCCTCCTCTACTCCTT-TGATTT 178 ||||||||| ||||| | ||||||||||||||||||||||||||| |||||| | |||| Sbjct 148 TTACCGCTCAAGATCCTCCTCATCATCATCATCTCAATCCTCCTCTTCTCCTTCT-ATTT 206 Query 179 CATCACAAACAATCAAAGAAAGCCTCGCTGTAACGGCGTTCCGCGACGCGGTGGAGAGAT 238 |||||||||| |||||||||||||| || || | || |||||||||||||||||||||| Sbjct 207 CATCACAAACCATCAAAGAAAGCCTAGCCGTGTCCGCTTTCCGCGACGCGGTGGAGAGAT 266 Query 239 CTCCCGCGACAATAAACGACACGTGCGCCGTGTGTCTAGGAGATCTTGAAGACGATGATG 298 |||||||| | |||||||||| ||| ||||||||||||||||||||||||||||| || | Sbjct 267 CTCCCGCGGCGATAAACGACATGTGTGCCGTGTGTCTAGGAGATCTTGAAGACGAGGACG 326 Query 299 AAATCAGAGAGCTTAGGAATTGTAGC-CATGTTTTTCATCGTGATTGTATTGACCGGTGG 357 ||||||||||||||||||| |||| | || || ||||||||||||||||||||||| ||| Sbjct 327 AAATCAGAGAGCTTAGGAACTGTA-CTCACGTGTTTCATCGTGATTGTATTGACCGATGG 385 Query 358 CTAGATTATGAATGTCGCGGTGGCGATGAGGATAACCACCGTACTTGTCCGCTATGTCGA 417 ||||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||| Sbjct 386 CTAGATTATGAATGTTGCGGCGGTGATGATGATAACCACCGTACTTGTCCCCTATGTCGA 445 Query 418 ACACCGTTGCTTCCGTCGTTCTCTGATTGCTCCACCGTTAATCAACCTAGCTGGGCCGTT 477 || ||||||||||| || ||| |||||| ||| ||||||| |||| |||| ||||| ||| Sbjct 446 ACGCCGTTGCTTCCATCTTTCACTGATTACTCAACCGTTACTCAAACTAGTTGGGCTGTT 505 Query 478 GAACGACTTCTTTACCTCTTCGGCGACGATCTTCTTCCCTGAATTTTATTTTT 530 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 506 GAACGACTTCTTTACCTCTTCGGCGACGATCTTCTTCCCTGACTTTTATTTTT 558 Score = 126 bits (68), Expect = 2e-28 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 531 GAGGAGTAGAATAGGAAATATAAGAATGATTGATCTCAATTATACGAAAACGAACCAATT 590 |||| || ||||||||||||||||| ||||||||| ||||||||||||| |||| ||||| Sbjct 611 GAGGGGTCGAATAGGAAATATAAGAGTGATTGATCGCAATTATACGAAATCGAATCAATT 670 Query 591 TGATTTGATTGTATATACAAATGTTA 616 |||||||||||||||||||||||||| Sbjct 671 TGATTTGATTGTATATACAAATGTTA 696 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29688380877 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5