BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484800
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 540 4e-153
AT3G44130.1 | Symbols: | F-box and associated interaction doma... 154 6e-37
AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 134 8e-31
> AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ribosomal protein S5 domain 2-like superfamily protein
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453
Score = 540 bits (292), Expect = 4e-153
Identities = 354/383 (92%), Gaps = 8/383 (2%)
Strand=Plus/Plus
Query 5 tttttATCATTTTTAAATGGGATTCATTGAAATCTCTCGTTTATATTTTCAG-GGATACA 63
|||||||| ||||| |||||||| ||| ||| |||||||||||||||||||| |||||||
Sbjct 16 TTTTTATCCTTTTTGAATGGGATACATGGAACTCTCTCGTTTATATTTTCAGAGGATACA 75
Query 64 AAAGTTATAGCTGCAG-AATACAGACCTAAAGCAGGAACGAAGGAGAACGAAAATGCTGA 122
|||||| || |||| | ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 76 AAAGTTCTATCTGC-GCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGA 134
Query 123 GAAGGCTTGTTTTGAAGTC-TATGGAAACCTTAAACCGGATAGATTGGTAATCGTAAATG 181
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 135 GAAGGCTTG-TTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATG 193
Query 182 CGCTTACTTGTTCA-AAAGGAGGTTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTAT 240
|| ||| || |||| ||| |||| ||||||||| |||||||||||||||||| ||||||
Sbjct 194 CGTTTAGTTTTTCAGAAA-GAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTAT 252
Query 241 GAAACGATACTGAAAAGGACGCTACAGAGTATTTGTGTTTTGACAGTTGTTCCAAATACC 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 253 GAAACGATACTGAAAAGGACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACC 312
Query 301 ACCACCTCAGTGATCATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTT-ATGTTCC 359
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 313 ACCACCTCAGTGATTATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCC 372
Query 360 TTACACCTTGGTAAACATTTACT 382
|| ||||||||||||||||||||
Sbjct 373 TTTCACCTTGGTAAACATTTACT 395
> AT3G44130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942
Score = 154 bits (83), Expect = 6e-37
Identities = 104/114 (91%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 57 GGATACAAAAGTTATAGCTGCAGAATACAGACCTAAAGCAGGAACGAAGGAGAACGAAAA 116
||||||||||||| || ||||| ||||| ||||||||||| ||||||| ||||||||||
Sbjct 798 GGATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAA 857
Query 117 TGCTGAGAAGGCTTGTTTTGAAGTC-TATGGAAACCTTAAACCGGATAGATTGG 169
|||||||||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 858 TGCTGAGAAGGCTTGTTT-GAAGTCATATGGAAGCCTTAAACCGGATAGATTGG 910
> AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062
Score = 134 bits (72), Expect = 8e-31
Identities = 102/116 (88%), Gaps = 3/116 (3%)
Strand=Plus/Plus
Query 56 GGGATACAAAAGTTATAGCTGCAGAATACAGACCTAAAGCAGGAACGAAGGAGAACGAAA 115
|||||||||||||| ||||||| | || ||||||||||||||||||| |||||||||
Sbjct 229 GGGATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACGAAA 288
Query 116 ATGCTGAGAAGGCTTGTTTTGAAGTC-TATGGAAACCTTAAA-CCGGATAGATTGG 169
|||||||||||||||||||||||||| ||||||| ||| ||| |||| |||||||
Sbjct 289 ATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCT-AAATCCGGGCAGATTGG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5