BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484801
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43520.1 | Symbols: | Transmembrane proteins 14C | chr3:154... 1415 0.0
> AT3G43520.1 | Symbols: | Transmembrane proteins 14C | chr3:15406023-15407908
FORWARD LENGTH=997
Length=997
Score = 1415 bits (766), Expect = 0.0
Identities = 934/1009 (93%), Gaps = 36/1009 (4%)
Strand=Plus/Plus
Query 1 AAAATCAATCAATCACTAAAATTAGTCGTTAAAC--AAAGCTTGC---GAAG-A-A-GAA 52
|||||||||||||||||||||||||||||||||| ||||||||| |||| | | |||
Sbjct 2 AAAATCAATCAATCACTAAAATTAGTCGTTAAACAAAAAGCTTGCGAAGAAGAAGACGAA 61
Query 53 GAAAATGGCGGATTTGATTATGAG-T--TCCTCTGCACAATCCTCTCTCCTTCACGTCAG 109
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 62 GAAAATGGCGGATTTGATTTTGAGTTCCTCCTCTGCACAATCCTCTCTCCTTCACGTCAG 121
Query 110 ACCCAATCTCT-TCCTACTCAATACCTCCACTGCTTCACCGATCCGAAGTGTCAGATTCC 168
||| |||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACCTAATCACTAT-CTACTCAATACCTCCACTGCTTCACCGATCCGAAGTGTCAGATTCC 180
Query 169 AAAATTCCAACGGTTTTCATCCTCTGGCGTTCGCATCTGGTCACCGACGACTTCCTCTCG 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAATTCCAACGGTTTTCATCCTCTGGCGTTCGCATCTGGTCACCGACGACTTCCTCTCG 240
Query 229 GTGCAGTTGTTCCCTCTGATTCGACTAAGACGATCACCGGTACTATTACTGCTAATTGTG 288
||||||| ||||||||||| || ||||||||||||||| |||| ||||||||||| || |
Sbjct 241 GTGCAGTAGTTCCCTCTGACTCCACTAAGACGATCACCAGTACGATTACTGCTAACTGCG 300
Query 289 TTGATTCAGGTGTAAAAGCTGTTGAAGTCGAGCCTACGATCGATTACGGAggtggtggtg 348
||||||| || || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TTGATTCGGGAGTCAAAGCTGTTGAAGTCGAGCCTACGATCGATTACGGA------GGTG 354
Query 349 gtggtggaattggaggtgataaatttggcggcggtggtggaggcggcgatggaAATGACG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTGGTGGAATTGGAGGTGATAAATTTGGCGGCGGTGGTGGAGGCGGCGATGGAAATGACG 414
Query 409 ACGGAGAAGATGGTGATAAGGAAGAGAGTGACGGGAAAAA-AGGCACGCCTCTGTCTATG 467
|||||| || | |||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 415 ACGGAGGGGAAGACGATAAGGAGGAGAGTGACGGGAAGAAGAG-CACGCCTCTGTCTATG 473
Query 468 TCGCAGAAATTGACTCTTGGTTACGCTTTTCTCGTTGGAGTTGGTGGGCTGATGGGTTAT 527
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 474 TCGCAGAAGTTGACTCTTGGTTACGCTTTTCTCGTCGGAGTTGGTGGGCTGATGGGTTAT 533
Query 528 CTGAAGAGCGGTAGCCAGAAATCGCTGCTTGCAGGTGGACTGTCAGCTGCTGTTCTGCTG 587
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 534 CTGAAGAGCGGTAGCCAGAAATCGTTGCTTGCAGGTGGACTGTCAGCTGCTGTTCTGCTG 593
Query 588 TATGTCTTCAGCCAGCTCCCAACAAAACCTGTTCTTGCATCAACCGTTGGCGTAGTGATG 647
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 TATGTCTTCAGTCAGCTCCCAACAAAACCTGTTCTTGCATCAACCGTTGGTGTAGTGATG 653
Query 648 GCGGGTGCATTAACGTACGTGATGGGAACCCGGTACATGGGATCGAAGAAGATATTTCCT 707
|||||||| |||| |||||| ||||||||||| |||||| | ||||||||||||||||||
Sbjct 654 GCGGGTGCGTTAATGTACGTAATGGGAACCCGATACATGCGTTCGAAGAAGATATTTCCT 713
Query 708 GCTGGAGTCGTGTCGATCATGTCTTTCATTATGACCGGAGGATACATACACGGTATCATG 767
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GCTGGAGTTGTGTCGATCATGTCTTTCATTATGACCGGAGGATACATACACGGTATCATG 773
Query 768 CGTAGCCTTCACTAAGCAGCAGCAAACACTCTCGAGTCTGTTACAAAAGTGTCT-GTCTC 826
|| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 774 CGCAGCCTCCACTAAGCAGTAGCAAACACTCTCGAGTCTGTTACAAAAGTGTCTTGTCTC 833
Query 827 TGACCTTTTTCTTTCTTT--GTGTGT-TT-CACGGTGTA-AA-GCAGCTTCGCTACTTTG 880
|||||||||||||||||| |||||| || ||||||||| || ||||||| |||||||||
Sbjct 834 TGACCTTTTTCTTTCTTTATGTGTGTGTTTCACGGTGTATAAAGCAGCTTTGCTACTTTG 893
Query 881 TGTTTTGTATGAACCATAAGAAAACTA-C-C-AAAACGTTCCAGAGAAGTACTTTATGGA 937
| ||| || |||||||||||||||||| | | ||||||||| | || | ||||||||||
Sbjct 894 T-TTT-GTCTGAACCATAAGAAAACTAGCACCAAAACGTTCTAAAG--G-ACTTTATGGA 948
Query 938 TTTAGCTCTGTGGTCAGAATCTAAAAACTCAAATTATTCCCGAAAATCT 986
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TTTAGCTCTGTGGTCAGAATCTAAAAACTCAAATTATTCCCGAAAATCT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48275015267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5