BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484802
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43540.1 | Symbols: | Protein of unknown function (DUF1350)... 1849 0.0
> AT3G43540.1 | Symbols: | Protein of unknown function (DUF1350)
| chr3:15430689-15433187 FORWARD LENGTH=1355
Length=1355
Score = 1849 bits (1001), Expect = 0.0
Identities = 1137/1203 (95%), Gaps = 7/1203 (1%)
Strand=Plus/Plus
Query 1 TCTGACTTAACGTTTGCTTCTTCTTCTTCACACAAAACTGTACGGAAGAAAAAGAATAAT 60
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 24 TCTGACTAAACGTTTGCTTCTTCTTCTTCACACAAAACTGTAGGGAAGAAAAGGAATAAT 83
Query 61 GGAGTTTGCATTAGCCACTTCGAGTTTTCTGGGTACGCAAGTGATTCCGGCGACTCTGAT 120
|||||||| ||||||||||||||||||||||||||| ||| | || ||||| |||||| |
Sbjct 84 GGAGTTTGGATTAGCCACTTCGAGTTTTCTGGGTACTCAACTAATCCCGGCCACTCTG-T 142
Query 121 TT-GCAGACGAGCTCGAGCTGTCTCTCTCACCGTCACTGCGA---GTGGAAGTAGAAACG 176
|| ||| ||||||||||||| | |||||||||||||| |||| |||| || ||||||
Sbjct 143 TTAGCAAACGAGCTCGAGCTTTGTCTCTCACCGTCACAGCGACCGGTGGCAGCAGAAACA 202
Query 177 ATAAGATTTACACGAGGCTTGATTCTTGTCTAGTGATTCCTCCTCCTCCTAGATTCAAGA 236
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 203 ATAAGGTTTACACGAGGCTTGATTCTTGTCTAGTGATTCCTCCTCCTCCTAAATTCAAGA 262
Query 237 AACCGCGTGCTATTGTTAAGTTCTTGGGAGGTGCCTTCGTCGGAGCTGTACCTGAACTCA 296
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 263 AACCGCGTGCTATTGTTAAATTCTTGGGAGGTGCCTTCGTCGGAGCTGTTCCTGAACTCA 322
Query 297 CTTACAGTTACCTCAAGGAGCTACTGGCAAAGGAAGGGTATTTAATAGTATCAGTGCCGT 356
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 323 CTTACAGTTACCTTAAGGAGCTACTGGCAAAGGAAGGGTATTTGATAGTATCTGTGCCGT 382
Query 357 ACAATGTTACATTTGATCATGAACAAGCTGCTAAGCAGGTTTATGAGAGGTTTAATTCTT 416
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 383 ACAATGTTACATTTGATCATGAACAAGCTGCTAAGCAAGTTTATGAGAGGTTTAATTCAT 442
Query 417 GCTTGGACACGATTATCTCATCTGGAATTCCAACTGCAAATTTGAAGCCTGAAGATCTAG 476
|||||||||||||| |||||||||||||||||| | |||| |||||||||| |||| |||
Sbjct 443 GCTTGGACACGATTGTCTCATCTGGAATTCCAAATTCAAACTTGAAGCCTGGAGATTTAG 502
Query 477 CTGACCTTCCTCTTTTCTCAGTTGGTCACAGTAATGGTGCGCTGCTCCAAGTTTTGACCG 536
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 503 CTGACCTTCCTCTTTTCTCAGTTGGTCACAGTAATGGTGCACTGCTCCAAGTTTTGACCG 562
Query 537 GAAGTTATTTTGCTGAGAAGATACCAAAGGTTAACGCCATCATTTCATTCAACAACAAAT 596
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 563 GAAGTTATTTTGCTGAGAAGATACCAAAGGTTAATGCCATTATTTCATTCAATAACAAAT 622
Query 597 CAGCGACAGAGGCAGTTCCATATTTTGAGCAGCTTGGCCCTCTTATTCAGCAGATGCTGC 656
||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 623 CAGCGACAGAGGCGGTTCCATATTTTGAGCAGCTTGGTCCTCTCATCCAGCAGATGCTGC 682
Query 657 CAATGGTGGAAGCTTCTCCAGTATATGAAATGGCTCGAAATGCTTCAGGTGATGTTTTGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CAATGGTGGAAGCTTCTCCAGTATATGAAATGGCTCGAAATGCTTCAGGTGATGTTTTGA 742
Query 717 AACTCTTACTTGACACAGCTGGGACAACGATTCTAAATAACGATCAAGAAGCTCTTAAGT 776
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 743 AACTCTTACTTGACACAGCTGGGACAACGATTCTAAACAACGATCAAGAAGCTCTTAAGT 802
Query 777 CATTTACTAAATTGGTGGATCAATTGCCCTCAGTGTTTGGTGAGGTAGGACAAGGAGTGT 836
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 803 CATTTACTAAATTGGTGGATCAATTGCCATCAGTATTTGGTGAGGTAGGACAAGGAGTGT 862
Query 837 CGGAATTCAGACCGTCACCACTTGAGAATCGCAATTGCTTCAAGTGCTCCTACAGCATTC 896
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 863 CAGAATTCAGACCGTCACCACTTGAGAATCGCAATTGCTTCAAGTGCTCCTACAGCGTTC 922
Query 897 CACACACTTTACTGGTACAATTCAACTCTGATGCAATCGACGAAACCGATTTGCTCGAAG 956
|||||||| ||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 923 CACACACTCTACTGGTACAATTCAACTCCGATGCAATCGACGAGACTGATTTGCTCGAAG 982
Query 957 AAACCCTTAGGCCTCGGATAGAATCTATTGGTGGTACACTTGAAAAGGTTCGGCTGAATG 1016
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 983 AAACTCTTAGGCCTCGGATAGAATCTATTGGTGGTACACTTGAAAAGGTTCGGCTGAACG 1042
Query 1017 GAAACCATCTCACACCTTGCATACAGGACCCAAAGTGGCAAATTGGGTCTGTGTACACAC 1076
|||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 1043 GAAACCATCTTACACCTTGCATACAGGATCCAAAGTGGCAAATTGGGACTGTGTACACGC 1102
Query 1077 CAGCAGATGCTGTGGCTCAGGCGCTAAAGACTATTCCTCTTAGCGAAACTCGAGTTCTTT 1136
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1103 CAGCAGACGCTGTGGCTCAGGCGCTAAAGACCATTCCTCTTAGCGAAACTCGAGTTCTTT 1162
Query 1137 CCAGGACGATCGTTGACTGGTTTAGACGGTTTGAGGATT-AGCCTATCTCATGTATTGTT 1195
||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| ||||
Sbjct 1163 CCAGGACGATCGTTGACTGGTTTAGACGGTTTGAGAATTGAGC-TGTCTCATGTAATGTT 1221
Query 1196 GAA 1198
|||
Sbjct 1222 GAA 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5