BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484806
Length=602
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43630.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 946 0.0
AT3G43660.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 798 0.0
AT1G21140.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 721 0.0
> AT3G43630.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr3:15538816-15539418 FORWARD LENGTH=603
Length=603
Score = 946 bits (512), Expect = 0.0
Identities = 573/603 (95%), Gaps = 2/603 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCTCACAACACCTTGAACCTAGACATGGAGGAAA-ATCAAGAAAAGGCTTTTGA 59
|||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1 ATGGAATCTCACAACACCTTGAACCTAGACATGGA-GAAAGATCAAGAAAAGGCTTTTGA 59
Query 60 CTACTCCAAACGAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCGAACGACGGTCTAGT 119
||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| ||
Sbjct 60 CTACTCCAAACGAGCTCAATGGCTAAGAGCCGCTGTGCTTGGTGCCAACGACGGTCTTGT 119
Query 120 CTCGACGGCTTCACTTATGATGGGTGTTGGTGCGGTCAAGCAAGACGTCAAGATCATGAT 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CTCGACGGCTTCACTTATGATGGGTGTTGGTGCGGTCAAGCAAAACGTCAAGATCATGAT 179
Query 180 CTTAACTGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTGT 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CTTAACTGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATTGGAGAGTTTGT 239
Query 240 CTCCGTTTACTCTCAGTATGACATAGAGGTGGCTCAGATGAagagagagaccggaggaga 299
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CTCTGTTTACTCTCAATATGACATAGAGGTAGCTCAGATGAAGAGAGAGACCGGAGGAGA 299
Query 300 ggtagagaaagagaAACTCCCGAGCCCAACCCAAGCGGCTGCAGCATCTGCGTTAGCGTT 359
| | ||||||||||| || || || ||||| |||||||||||||||||||||||||||||
Sbjct 300 GATTGAGAAAGAGAAGCTTCCAAGTCCAACACAAGCGGCTGCAGCATCTGCGTTAGCGTT 359
Query 360 TTCTCTCGGGGCGATGGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAG 419
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TTCTCTTGGGGCGATGGTGCCGTTATTGGCGGCAGCGTTTGTGAAAGAGTATAAAGTGAG 419
Query 420 GATTGGAGTGATTGTGGCAGCGGTTACGTTGGCGTTAGTGATGTTTGGATGGTTAGGGGC 479
|||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GATTGGTGCAATAGTGGCAGCGGTTACGTTGGCGTTGGTGATGTTTGGATGGTTAGGGGC 479
Query 480 GGTTTTGGGGAAAGCACCGGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGGTT 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTTTTGGGGAAAGCACCAGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGGTT 539
Query 540 AGCTATGGCCATTACGTTTGGTTTTACAAAACTCATTGGGTCACATGGTCATATGTATGT 599
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 AGCTATGGCCATTACGTATGGTTTTACAAAACTCATTGGGTCACATAGTCATATGTATGT 599
Query 600 GTG 602
|||
Sbjct 600 GTG 602
> AT3G43660.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr3:15565224-15566047 FORWARD LENGTH=824
Length=824
Score = 798 bits (432), Expect = 0.0
Identities = 545/599 (91%), Gaps = 10/599 (2%)
Strand=Plus/Plus
Query 11 ACAACACCTTGAACCTAGACATGGAGGAAA-ATCAAGAAAAGGCTTTTGACTACTCCAAA 69
|||||| |||||||||||||||||| |||| ||||||||| | |||| ||||||||||||
Sbjct 122 ACAACAACTTGAACCTAGACATGGA-GAAAGATCAAGAAACGACTTTCGACTACTCCAAA 180
Query 70 CGAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCGAACGACGGTCTAGTCTCGACGGCT 129
||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||||
Sbjct 181 CGAGCTCAATGGCTACGAGCCGCCGTGCTAGGTGCCAACGATGGTCTTGTCTCAACGGCT 240
Query 130 TCACTTATGATGGGTGTTGGTGCGGTCAAGCAAGACGTCAAG-ATCATGATCTTAACTGG 188
||||||||||||||| |||||||||| |||||||||||| || |||||| ||||||| ||
Sbjct 241 TCACTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTC-AGAATCATGCTCTTAACCGG 299
Query 189 TTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTGTCTCCGTTTA 248
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 TTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTATCTCCGTTTA 359
Query 249 CTCTCAGTATGACATAGAGGTGGCTCAGATGAagagagagaccggaggagaggtagagaa 308
||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | ||||
Sbjct 360 CTCTCAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGGAGACAAAGAA 419
Query 309 agagaAACTCCCGAGCCCAACCCAAGCGGCTG-CAGCATCTGCGTTAGCGTTTTCTCTCG 367
|||||| || || || ||||| ||||||||| | || ||||| ||||| ||| |||| |
Sbjct 420 AGAGAAGCTTCCAAGTCCAACGCAAGCGGCTATC-GCGTCTGCATTAGCATTTACTCTAG 478
Query 368 GGGCGATGGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAG 427
| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 GAGCGATTGTGCCGCTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTTAGGATTGGAG 538
Query 428 TGATTGTGGCAGCGGTTACGTTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGG 487
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGATTGTGGCGGCGGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGG 598
Query 488 GGAAAGCACCGGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGGTTAGCTATGG 547
| |||||||| ||||||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 599 GAAAAGCACCAGTGGTTAAGTCGTTGGTTCGGGTTTTGATTGGAGGATGGTTAGCTATGG 658
Query 548 CCATTACGTTTGGTTTTACAAAACTCATTGGGTCACATGGTC----ATATGTATGTGTG 602
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 659 CCATTACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATATGTATGTGTG 717
> AT1G21140.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr1:7404383-7405281 FORWARD LENGTH=899
Length=899
Score = 721 bits (390), Expect = 0.0
Identities = 528/594 (89%), Gaps = 12/594 (2%)
Strand=Plus/Plus
Query 12 CAACACCTTGAACCTAGACATGGAGGA-AAATCAAGAAAAGGCTTTTGACTACTCCAAAC 70
||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct 102 CAACAGCTTGAACCTAGACATGGA-GATGGATCAAGAAAAGGCTTTCGACTACTCCAAAA 160
Query 71 GAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCGAACGACGGTCTAGTCTCGACGGCTT 130
|||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 161 GAGCTCAATGGCTAAGAGCCGCCGTGCTTGGTGCCAACGACGGTCTTGTCTCGACGGCTT 220
Query 131 CACTTATGATGGGTGTTGGTGCGGTCAAGCAAGACGTC-AAGATCATGATCTTAACTGGT 189
|||||||||||||||| |||||||| |||||||||||| ||| ||||||||||| |||||
Sbjct 221 CACTTATGATGGGTGTCGGTGCGGTAAAGCAAGACGTCAAAG-TCATGATCTTATCTGGT 279
Query 190 TTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTGTCTCCGTTTAC 249
|| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 280 TTCGCCGGTTTGGTCGCCGGAGCTTGTAGCATGGCTATCGGAGAGTTTGTCTCCGTTTAC 339
Query 250 TCTCAGTATGACATAGAGGTGGCTCAGATGAagagagagaccggaggagaggtagagaaa 309
|||||||| ||||| ||||||||||| ||||||||||||| ||||||| | || ||||||
Sbjct 340 TCTCAGTACGACATCGAGGTGGCTCAAATGAAGAGAGAGAACGGAGGACAAGTGGAGAAA 399
Query 310 gagaAACTCCCGAG-CCCAACCCAAGCGGCTGCAGCATCTGCGTTAGCGTTTTCTCTCGG 368
||||| || ||||| |||| | |||||||||| || |||||||||||||||||| | ||
Sbjct 400 GAGAAGCTTCCGAGTCCCATGC-AAGCGGCTGCCGCGTCTGCGTTAGCGTTTTCTTT-GG 457
Query 369 G-GCGATGGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAG 427
| ||||| ||||| ||| |||||||||||||||||||||| ||| | ||||| || ||||
Sbjct 458 GTGCGATTGTGCCTTTAATGGCGGCTGCGTTTGTGAAAGACTATCACGTGAGAATAGGAG 517
Query 428 TGATTGTGGCAGCGGTTACGTTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGG 487
||| ||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||
Sbjct 518 CGATCGTGGCGGCGGTGACATTGGCGTTAGTGATGTTTGGGTGGTTAGGAGCGGTTTTGG 577
Query 488 GGAAAGCACCGGTGGTTAAGTCGTCG-CTTAGGGTTTTGGTTGGAGGATGGTTAGCTATG 546
|||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 578 GGAAAGCACCGGTGTTTAAGTCGTCGGCT-AGGGTTTTGATTGGAGGATGGTTAGCTATG 636
Query 547 GCCATTACGTTTGGTTTTACAAAACTCATTGGGTCACATGGTCATATG-TATGT 599
||| |||| |||||||| |||||||| |||||| ||||| ||| | || |||||
Sbjct 637 GCCGTTACTTTTGGTTTGACAAAACTGATTGGGACACATAGTC-TGTGATATGT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28985102819
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5