BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484807
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43660.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 1142 0.0
AT3G43630.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 719 0.0
> AT3G43660.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr3:15565224-15566047 FORWARD LENGTH=824
Length=824
Score = 1142 bits (618), Expect = 0.0
Identities = 746/804 (93%), Gaps = 24/804 (3%)
Strand=Plus/Plus
Query 1 CATCCTAGGCGTGTGTTCTCCACACTTCACCGATATTCTCTACCTTCATTTTCAGTA-tt 59
|||||||||||||||||| |||||||| | | ||||||| | |||||||||| || ||
Sbjct 9 CATCCTAGGCGTGTGTTCACCACACTT---C-A-ATTCTCTTCTTTCATTTTCACTATTT 63
Query 60 tttttCTCGTTTAACAAAAG------AAACCAGAAGGT-CTAACCATGG-A--AACCAAC 109
|||||||||||||||||||| |||||| ||||| |||||||||| | || ||||
Sbjct 64 TTTTTCTCGTTTAACAAAAGAAACCAAAACCAAAAGGTCCTAACCATGGAATCAAACAAC 123
Query 110 AACAACTTGAACCTAGACATGGAGAAAGATCAAGATACGACTTTCGACTACTCCAAACGA 169
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 124 AACAACTTGAACCTAGACATGGAGAAAGATCAAGAAACGACTTTCGACTACTCCAAACGA 183
Query 170 GCTCAATGGCTACGAGCCGCCGTGCTCGGTGCCAACGATGGTCTAGTCTCAACGGCTTCA 229
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 184 GCTCAATGGCTACGAGCCGCCGTGCTAGGTGCCAACGATGGTCTTGTCTCAACGGCTTCA 243
Query 230 CTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTCAGAACCATGCTTTTAACCGGTTTT 289
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 244 CTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTCAGAATCATGCTCTTAACCGGTTTT 303
Query 290 TCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAATTTATCTCCGTTTACTCT 349
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 GCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTATCTCCGTTTACTCT 363
Query 350 CAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGGAGACAAAGAAAGAA 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGGAGACAAAGAAAGAG 423
Query 410 AAGCTTCCAAGCCCGATGCTAGCGGCTATCGCGTCTGCGTTATCATTTTCTCTAGGAGCG 469
||||||||||| || | || |||||||||||||||||| ||| ||||| |||||||||||
Sbjct 424 AAGCTTCCAAGTCCAACGCAAGCGGCTATCGCGTCTGCATTAGCATTTACTCTAGGAGCG 483
Query 470 ATTGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGAGGGATT 529
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 484 ATTGTGCCGCTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTTAGGATTGGAGTGATT 543
Query 530 GTGGCGGCAGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGGGGAAG 589
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 544 GTGGCGGCGGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGGGAAAA 603
Query 590 GCACCGGTGGTTAAGTCGTCGCTAAGGGTTTTGATCGGAGGATGGTTAGCTATGGCCATT 649
||||| ||||||||||||| | | |||||||||| ||||||||||||||||||||||||
Sbjct 604 GCACCAGTGGTTAAGTCGTTGGTTCGGGTTTTGATTGGAGGATGGTTAGCTATGGCCATT 663
Query 650 ACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATATGTATGTGTGAGTTTA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 ACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATATGTATGTGTGAGTTTA 723
Query 710 CTTACGTGACCAAACCCTTCTTCATGTTTCATGCTTCAAAAACTGGA--------TGTAA 761
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 724 CTTACGTGACCAAACCCTTCTTCATGTTTCATGCTTCAAAAACTGGAAAAAAAAATGTAA 783
Query 762 TAAGTAGAATGAATTTCTAATGAA 785
|||||||||| |||||||||||||
Sbjct 784 TAAGTAGAATTAATTTCTAATGAA 807
> AT3G43630.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr3:15538816-15539418 FORWARD LENGTH=603
Length=603
Score = 719 bits (389), Expect = 0.0
Identities = 538/610 (88%), Gaps = 10/610 (2%)
Strand=Plus/Plus
Query 98 ATGGAAAC-CAACAACAACTTGAACCTAGACATGGAGAAAGATCAAGATACGACTTTCGA 156
|||||| | | |||||| |||||||||||||||||||||||||||||| | | |||| ||
Sbjct 1 ATGGAATCTC-ACAACACCTTGAACCTAGACATGGAGAAAGATCAAGAAAAGGCTTTTGA 59
Query 157 CTACTCCAAACGAGCTCAATGGCTACGAGCCGCCGTGCTCGGTGCCAACGATGGTCTAGT 216
||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||| ||
Sbjct 60 CTACTCCAAACGAGCTCAATGGCTAAGAGCCGCTGTGCTTGGTGCCAACGACGGTCTTGT 119
Query 217 CTCAACGGCTTCACTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTC-AGAACCATGC 275
||| ||||||||||||||||||||| |||||||||| |||||| ||||| || | ||||
Sbjct 120 CTCGACGGCTTCACTTATGATGGGTGTTGGTGCGGTCAAGCAAAACGTCAAG-ATCATGA 178
Query 276 TTTTAACCGGTTTTTCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAATTTA 335
| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 179 TCTTAACTGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATTGGAGAGTTTG 238
Query 336 TCTCCGTTTACTCTCAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGG 395
|||| ||||||||||| || ||||||||||| ||||||||||||||||||| |||||| |
Sbjct 239 TCTCTGTTTACTCTCAATATGACATAGAGGTAGCTCAGATGAAGAGAGAGACCGGAGGAG 298
Query 396 AGACAAAGAAAGAAAAGCTTCCAAGCCCGATGCTAGCGGCTATC-GCGTCTGCGTTATCA 454
||| ||||||| ||||||||||| || | | ||||||| | || ||||||||| |
Sbjct 299 AGATTGAGAAAGAGAAGCTTCCAAGTCCAACACAAGCGGCTG-CAGCATCTGCGTTAGCG 357
Query 455 TTTTCTCTAGGAGCGATTGTGCCGTTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTG 514
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 TTTTCTCTTGGGGCGATGGTGCCGTTATTGGCGGCAGCGTTTGTGAAAGAGTATAAAGTG 417
Query 515 AGGATTGGAGGGATTGTGGCGGCAGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGG 574
|||||||| | || ||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 418 AGGATTGGTGCAATAGTGGCAGCGGTTACGTTGGCGTTGGTGATGTTTGGATGGTTAGGG 477
Query 575 GCGGTTTTGGGGAAGGCACCGGTGGTTAAGTCGTCGCTAAGGGTTTTGATCGGAGGATGG 634
|||||||||||||| ||||| ||||||||||||||||| ||||||||| | |||||||||
Sbjct 478 GCGGTTTTGGGGAAAGCACCAGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGG 537
Query 635 TTAGCTATGGCCATTACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGATAT 694
||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||
Sbjct 538 TTAGCTATGGCCATTACGTATGGTTTTACAAAACTCATTGGGTCACATAGTC----ATAT 593
Query 695 GTATGTGTGA 704
||||||||||
Sbjct 594 GTATGTGTGA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38177951720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5