BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484808
Length=2235
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43670.1 | Symbols: | Copper amine oxidase family protein |... 3317 0.0
AT1G62810.1 | Symbols: | Copper amine oxidase family protein |... 1339 0.0
AT3G43820.1 | Symbols: | pseudogene, copper amine oxidase prot... 431 2e-119
> AT3G43670.1 | Symbols: | Copper amine oxidase family protein
| chr3:15567099-15569901 FORWARD LENGTH=2276
Length=2276
Score = 3317 bits (1796), Expect = 0.0
Identities = 2034/2149 (95%), Gaps = 15/2149 (1%)
Strand=Plus/Plus
Query 56 CTAACAATGGTGGAACCTTCCTTCTCTCAACTCCTTGTCTTA-TTTATAAGCTTACTCTT 114
|||||||||||||||| ||| |||||||| |||||||||||| ||| |||||||||||||
Sbjct 40 CTAACAATGGTGGAACTTTCGTTCTCTCAGCTCCTTGTCTTACTTT-TAAGCTTACTCTT 98
Query 115 TCTCTTCACTACTCTCGGGTCAAGTTCCAAGA---CCCGATTCAAGTATTCGTTAGAAAA 171
||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||
Sbjct 99 TCTCTTCACTACTCTCGCGTCAAGTTCCAAGACCCCCCGATTCAAGTATTCGTTAGAGAA 158
Query 172 GCCTCACCACCCGCTTGACCCACTAACGACACCTGAAATAAAGAGAGTCCAAACCATTCT 231
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 159 GCCTCACCACCCACTTGACCCACTAACGACACCTGAAATAAAGAGAGTCCAAACCATCCT 218
Query 232 CTCGGGTCATGATCCGGGTTTCGGGTCCGGGTCAGCCATCATTCACGCCATGGCTCTCGA 291
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 219 CTCGGGTCATGATCCGGGTTTCGGGTCCGGGTCAACCATCATTCACGCCATGGCTCTCGA 278
Query 292 CGAGCCGGAGAAGCAACGTGTCGTCCGGTGGAAGAAAGGTGATCGTCTCCCGCCGCGAAG 351
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 279 CGAGCCGGATAAGCAACGTGTCATCCGGTGGAAGAAAGGTGATCGTCTCCCGCCGCGAAG 338
Query 352 AGCAGAGGTTCTTGCGATGTCTAACGGCGAGAGTCACGTGCTCACGGTGGATCTTAATTC 411
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 339 AGCGGAGATTCTTGCTATGTCTAACGGCGAGAGTCACGTGCTCACGGTGGATCTTAAATC 398
Query 412 GGGTCGGGTTGTTTCCGATTTGGTCAACCCCACTTTTGGGTATCCGATTCTTACCATGAA 471
|||||||||||||| |||||||||||||| |||||||| || ||||||||||| |||||
Sbjct 399 CGGTCGGGTTGTTTCTGATTTGGTCAACCCGACTTTTGGATACCCGATTCTTACTATGAA 458
Query 472 AGACATCATCGCAGTCTCACAGGTTCCTTACAAGAGCGTGGAGTTCAATCGCTCAATCGA 531
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GGATATCATCGCAGTCTCACAGGTTCCTTACAAGAGCGTGGAGTTCAATCGCTCAATCGA 518
Query 532 GGGGCGTGGGATTCCGTTCTCCGGTTTGATTTGTATTACACCGTTCGCCGGTTGGTATGG 591
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGCGCGTGGGATTCCGTTCTCCGGTTTGATTTGTATTACACCGTTCGCCGGTTGGTATGG 578
Query 592 ACCGGACGAAGAAGGACGACGAGTCATAAAGATCCAATGTTTCTCAAAGCAAGACACTGT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 ACCGGACGAAGAAGGACGACGAGTCATAAAGATCCAATGTTTCTCAAAGCAAGACACTGT 638
Query 652 CAATTTCTACATGAGACCTATTGAAGGACTTTATTTAACGGTCGATATGGATAAACTAGA 711
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 639 CAATTTCTACATGAGACCTATCGAAGGACTTTATTTAACCGTCGATATGGATAAATTAGA 698
Query 712 GATCATCAAGATTGTAGACAATGGACCGGTTCCGGTTCCCAAGTCTACCGGTACGGAATA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GATCATCAAGATTGTAGACAATGGACCGGTTCCGGTTCCCAAGTCTACCGGTACGGAATA 758
Query 772 TAGATATGGATTTCTTAATGAAACGGTACATATGGACCGTGTCAATCCAATGTCGATGGA 831
||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 759 TAGATATGGGTTTCTTAATGAAACGGTATATATGGACCGTGTCAACCCAATGTCGATGGA 818
Query 832 GCAACCGGACGGTCCAAGTTTTCAGGTTGAGGATGGATACTTGGTTAAGTGGGCGAATTG 891
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 819 GCAACCGGACGGTCCAAGTTTTCAAGTTGAGGATGGATACTTGGTTAAGTGGGCGAATTG 878
Query 892 GAAATTTCATATCAAACCGGACCAACGTGCCGGTATGATCATCTCACAGGCTACAGTTCG 951
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 879 GAAATTTCATATTAAACCGGATCAACGTGCCGGTATGATTATCTCACAGGCTACAGTTCG 938
Query 952 TGATTCCAAGACAGGTGAAGCAAGAAGTGTAATGTACAAAGGTTTTGCGTCAGAGTTGTT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 939 TGATTCCAAGACAGGTGAAGCAAGAAGTGTAATGTACAAAGGTTTTGCGTCGGAGTTGTT 998
Query 1012 CGTACCGTATATGGATCCAGGG-ACAGGTTGGTACTCCAAAGCGTACATGGATGCTGGAG 1070
||||||| |||||||||||||| | ||||||||| || ||||| ||||||||||||||||
Sbjct 999 CGTACCGAATATGGATCCAGGGGA-AGGTTGGTATTCAAAAGCTTACATGGATGCTGGAG 1057
Query 1071 AGTTTGGTTTAGGACCTTCTGCAATGCCGCTTGTGCCGCTCAACGACTGTCCTCGAAACG 1130
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct 1058 AGTTTGGTTTAGGACCTTCTTCAATGCCACTTGTGCCACTCAACGACTGTCCTCGAAACG 1117
Query 1131 CTTACTATATTGATGGTTTCTTCGCTTCTCCTCAAGGCATTCCAATCCTTCAACCTAAGA 1190
||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct 1118 CTTACTACATTGATGGTTTCTTCGCTTCTCCTGAAGGCATTCCAATACTTCAACCTAACA 1177
Query 1191 TGATCTGCTTGTTCGAACGCTACGCGGGTGACATTAGTTGGCGCCACTCTGAGATTCTTC 1250
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 1178 TGATCTGCTTGTTCGAACGCTACGCGGGTGACACTAGCTGGCGACACTCTGAGATTCTTC 1237
Query 1251 TCCCTGGTACAGATATAAAAGAATCAAGGGCAAAGGTGACGCTGGTGGCTAGAATGGCTT 1310
|||||||| |||||||| ||| |||||||||||||| || ||||| ||||||||||| |
Sbjct 1238 TCCCTGGTGTAGATATAAGAGAGTCAAGGGCAAAGGTTACACTGGTAGCTAGAATGGCAT 1297
Query 1311 GTTCAGTTGGGAACTATGATTATATATTTGATTGGGAGTTTCAAATGGATGGTTTGATTC 1370
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1298 GTTCTGTTGGGAACTATGATTATATTTTTGATTGGGAGTTTCAAATGGATGGTGTGATTC 1357
Query 1371 GTGTTACGGTCGCTGCCTCAGGGATGTTGATGGTGAAAGGAACGGCTTACCAAAACGTCA 1430
||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1358 GTGTTACGGTCGCGGCCTCGGGGATGTTGATGGTGAAAGGAACGGCTTACGAAAACGTTG 1417
Query 1431 AAGACTTGGGTGAGAAAGAGGCGGATTCTGGACCGTTGATCTCAGAAAACGTTATAGGAG 1490
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1418 AAGACTTGGGTGAGAAAGAGGATGATTCTGGACCGTTGATCTCAGAAAACGTTATAGGAG 1477
Query 1491 TCGTCCACGATCATTTTATATCGTTTCATCTAGACATGGACATTGACGGGTCAGCCAACA 1550
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1478 TCGTCCATGATCATTTCATATCGTTTCATCTAGACATGGACATTGATGGGTCAGCCAACA 1537
Query 1551 ACTCCTTCGTTAAGGTTCATCTAGAGAAGCAGAGACTTCCGCCTGGAAAATCAAGGAGAA 1610
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1538 ACTCCTTCGTTAAGGTTCATCTAGAGAAGCAGAGACTTCCACCTGGAGAATCAAGGAGAA 1597
Query 1611 AGAGTTACTTGAAGGTCAAGAAATATGTAGCCAAGACTGAGAAAGATGCTCAGATCAA-A 1669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1598 AGAGTTACTTGAAGGTCAAGAAATATGTAGCCAAGACTGAGAAAGATGCTCAGATCAAGA 1657
Query 1670 TTGAGCCTGTATGACCCCTACGAGTTCCATTTTGTGAACCCTAACAGGCGGTCTCGTTTA 1729
| ||||||||| |||||||||||||||||| |||||||||||||| | | ||||| |||
Sbjct 1658 T-GAGCCTGTACGACCCCTACGAGTTCCATCTTGTGAACCCTAACCGACTTTCTCGGTTA 1716
Query 1730 GGGAACCCGGCTGGTTACAAGCTTGTGCCTGGTGGTAATGCTGCAAGTTTGCTCGATCAT 1789
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1717 GGGAACCCGGCTGGTTACAAGCTTGTACCTGGTGGTAATGCTGCAAGTTTGCTCGATCAT 1776
Query 1790 GATGATCCACCTCAAATTAGAGGCGCTTTCACAAACAATCAGATATGGGTGACTCGGTAT 1849
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GATGATCCACCGCAAATGCGAGGCGCTTTCACAAACAATCAGATATGGGTGACTCGGTAT 1836
Query 1850 AACAGATCAGAGCAATGGGCCGGAGGGCTTTTGATGTACCAGAGCCGTGGTGAAGACACA 1909
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1837 AACCGGTCAGAGCAATGGGCTGGAGGGCTTTTGATGTACCAGAGCCGTGGTGAAGACACA 1896
Query 1910 CTACAAGTTTGGTCCGACAGAGATCGTTCCATTGAGAACAAGGACATAGTGTTGTGGTAT 1969
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1897 CTACAAGTTTGGTCCGACAGAGATCGGTCCATTGAGAACAAGGACATAGTGTTGTGGTAT 1956
Query 1970 ACACTAGGATTCCATCACATACCGTGCCAAGAAGATTTTCCAGTTATGCCAACAATAGCA 2029
|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1957 ACACTAGGGTTCCATCACGTACCGTGCCAAGAAGATTTTCCAGTGATGCCAACAATAGCA 2016
Query 2030 TCTAGCTTCGAACTGAAACCGGTCAATTTCTTCGAATCGAACCCGGTACTTGGGATCTCA 2089
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2017 TCTAGCTTTGAACTTAAACCGGTCAATTTCTTCGAATCGAACCCGGTACTTGGGATTTCA 2076
Query 2090 CCTTTCTTCGAGAAAGACTTACCACCAGTCTGTTGA-CCGGATCCTTCATCTTATTTGAC 2148
|||||||||||||||||||||||| ||||||| | || ||| |||||||||||| |||
Sbjct 2077 CCTTTCTTCGAGAAAGACTTACCA---GTCTGTTAAACCAGATGCTTCATCTTATTCGAC 2133
Query 2149 ACTGTGCATTT-CAAATGTCATGTTTAGACTTTTCCGATTATGA-TGTT 2195
||||||||||| |||||||||||| |||||||||| |||||| | ||||
Sbjct 2134 ACTGTGCATTTTCAAATGTCATGTGTAGACTTTTCTGATTATAAATGTT 2182
> AT1G62810.1 | Symbols: | Copper amine oxidase family protein
| chr1:23257726-23261966 REVERSE LENGTH=2860
Length=2860
Score = 1339 bits (725), Expect = 0.0
Identities = 1592/2009 (79%), Gaps = 65/2009 (3%)
Strand=Plus/Plus
Query 164 TTAGAAAAGCCTCACCACCCGCTTGACCCACTAACGACACCTGAAATAAAGAGAGTCCA- 222
|||||||||||||| || || ||||| ||||||||| | ||||| || ||||| ||
Sbjct 357 TTAGAAAAGCCTCATCATCCACTTGATCCACTAACGGTGCGAGAAATCAATAGAGT-CAG 415
Query 223 AACCATTCTCTCGGGTCATGATCCGGGTTTCGGGTCCGGGTCAGCCATC-ATTCACGCCA 281
||| || |||||| ||||| |||||||| || |||||||| |||| | |||||| |||
Sbjct 416 AACAATACTCTCGAACCATGACCCGGGTTTTGGTTCCGGGTCGGCCA-CGATTCACTCCA 474
Query 282 TGGCTCTCGACGAGCCGGAGAAG-CAACGTGTCGTCCGGTGGAAGAAAGGTGAT-CGTCT 339
|||||||||| |||||||||||| | ||||||||||| ||||||||| || || | ||
Sbjct 475 TGGCTCTCGATGAGCCGGAGAAGTC-ACGTGTCGTCCAGTGGAAGAAGGGAAATAAG-CT 532
Query 340 CCCGCCGCGAAGAGCAGAGGTTC-TTGC-GATGTCTAACGG-CGAGAGTCACGTGCTCAC 396
| | | |||||||| | || || | || || | || | | | || | | | ||
Sbjct 533 TCTGTCACGAAGAGCTGCGG-TCGTAGCTTAT-TGGGGTGGTC-AAACACATGAGATAAC 589
Query 397 GGTGGATCTTAATTCGGGTCGGGTTGTTTCCGATTTGGTCAACCCCACTTTTGGGTATCC 456
|||||||||| ||||||||||||| ||||| ||| || | |||| |||| ||||||||
Sbjct 590 GGTGGATCTTGATTCGGGTCGGGTAGTTTCTGATGTGATTAACCGGACTTCAGGGTATCC 649
Query 457 GATTCTTACCATGAAAGACATCATCGCAGTC-TCACAGGTTCCTTACAAGAGCGTGGAGT 515
|||||| ||| |||| ||| || |||| | | || |||||||||| |||||| |||| |
Sbjct 650 GATTCTCACCTTGAACGACGTCTTCGCTG-CTTCGCAGGTTCCTTTGAAGAGCTTGGAAT 708
Query 516 TCAATCGCTCAATCGAGGGGCGTGGGATTCCGTTCTCCGGTTTGA-TTTGTATTACACCG 574
| || ||||| || || | |||||| || ||| |||| ||| | ||| || ||||||
Sbjct 709 TTAACCGCTCCATTGAAGCTCGTGGGGTTAAGTTTTCCGATTT-AGCTTGCATCACACCG 767
Query 575 TTCGCCGGTTGGTATGGACCGGACGAAGAAGGACG-ACGAGTCATAAAGA-TCCAATGTT 632
|| ||||| |||| |||| |||| ||||||||||| | ||||||| |||| | |||||||
Sbjct 768 TTTGCCGGATGGTTTGGATCGGAGGAAGAAGGACGTA-GAGTCAT-AAGAGTTCAATGTT 825
Query 633 TCTC-AAAGCAAGACACTGTCAATT-TCTACATGAGACCTA-TTGAAGGACTTTATTTAA 689
|| | | |||| |||| ||||| | | |||||||| | | |||||||||||| |||
Sbjct 826 TCACGTTA-CAAGGCACTACCAATTAT-TTTATGAGACC-ACTCGAAGGACTTTATGTAA 882
Query 690 CGGTCGATATGGATAAACTAGAGATCATCAAGATTGTAGACAATGGACCGGTTCCGGTTC 749
|||||||| | || ||| | ||| | |||||||| | || || || || |||| |||
Sbjct 883 CGGTCGATCTAGACAAATTGGAGGTTATCAAGATCATCGATAAAGGCCCAATTCCAATTC 942
Query 750 CC-AAGTCTACCGGTACGGAATATAGATATGGAT-TTCTTAATGAAA-CGGTACATATGG 806
|| ||| || ||||||| ||||| | | ||| | ||| ||| ||| |||| |||||||
Sbjct 943 CCAAAGCCT-CCGGTACAGAATACCGGTTTGG-TGTTCAGAAT-AAACCGGTGCATATGG 999
Query 807 ACCGTGTCAATCCAATGTCGATGGAGCAACCGGACGGTCCAAGTTTTCA-GGTTGAGGAT 865
| ||| | || || || |||||||||||||| |||||||| |||||| | ||| || |||
Sbjct 1000 ATCGTATTAACCCGATTTCGATGGAGCAACCTGACGGTCCCAGTTTT-AGGGTCGAAGAT 1058
Query 866 GGATACTTGGTTAAGTGGGCGAATTGGAAATTT-CATATCAAACCGGACCAACGTGCCGG 924
|| | |||||||||||||| |||||| ||| ||| | ||| | |||||||| |||||
Sbjct 1059 GGGCATTTGGTTAAGTGGGCTAATTGG-GTTTTCCATGTTAAAGCTGACCAACGAGCCGG 1117
Query 925 TATGATCATCTCACAGGCTACAGTTCGTGATTCCAAGACAGGTGAAGCAAGAAGTGTAAT 984
||||||||| || ||||| || |||||||| ||| ||||||||||| |||||||||| ||
Sbjct 1118 TATGATCATATCTCAGGCCACGGTTCGTGACTCCGAGACAGGTGAACCAAGAAGTGTGAT 1177
Query 985 GTACAAAGGTTTTGCGTCAGAGTTGTTCGTACCGTATATGGATCCAG-GGACAGGTTGGT 1043
||||||||| || | ||||||||||| |||||||| ||||| || | ||| ||| ||||
Sbjct 1178 GTACAAAGGATTCCCATCAGAGTTGTTTGTACCGTACATGGACCCTGAGGA-AGGATGGT 1236
Query 1044 ACTCCAAAGCG-TACATGGATGCTGGAGAGTTTGGTTTAGGACCTTCTGCAATGCCGCTT 1102
||| ||||| | || |||||||| || ||| | ||||||||||| | |||||||||||
Sbjct 1237 ACTACAAAG-GTTATATGGATGCAGGCGAGCTCGGTTTAGGACCCACGGCAATGCCGCTC 1295
Query 1103 GTGCCGCTCAACGACTGTCCTCGAAACGCTTACTATATTGATGGT-TTCTTCGCTTCTCC 1161
||||| |||||||| || |||||||| |||||||||| || ||| || ||||| |||||
Sbjct 1296 GTGCCTCTCAACGATTGCCCTCGAAATTCTTACTATATAGACGGTGTT-TTCGCCTCTCC 1354
Query 1162 TCAAGGCATTCCAATCCTTCAACCTAAGATGATCTGCTTGTTCGAACGCTACGCGGGTGA 1221
| |||| || || |||||||||| ||||| |||||||| |||||||| || || ||
Sbjct 1355 AGACGGCAAACCCATTGTTCAACCTAATATGATATGCTTGTTTGAACGCTATGCAGGCGA 1414
Query 1222 CATTAGTTGGCGCCACTCTGAGATTC-TTCTCCCTGGTACAGATATAAAAGAATCAAGGG 1280
|| || ||||| || |||||||| | || | || | | ||||||| ||| ||||||
Sbjct 1415 TATCAGCTGGCGACATTCTGAGATCCTTTTTGCC-AATGCCGATATAAGAGAGTCAAGGC 1473
Query 1281 CAAAGGTGACGCTGGTGGCTAGAATGGCTTGTTCAGTTGGGAACTATGATTATATATTT- 1339
|||| || || |||| ||| ||||||| ||| ||||| || || || ||||| |||
Sbjct 1474 CAAAAGTTACATTGGTAGCTCGAATGGCAACTTCGGTTGGAAATTACGACTATAT-TTTC 1532
Query 1340 GATTGGGAGTTTCA-AATGGATGGTTTGATTCGTGTTACGGTCGCTGCCTCAGGG-ATGT 1397
|||||||||||||| | | ||||||||||| |||||||||||||| || || ||| ||||
Sbjct 1533 GATTGGGAGTTTCAGACT-GATGGTTTGATCCGTGTTACGGTCGCGGCTTC-GGGAATGT 1590
Query 1398 TGATGGTGAAAGGAACGGCTTACCAAAACGTCA-AAGACTTGGGTGAGAAAGAGGCGGAT 1456
| ||||||||||| || ||||| | || || | | ||||| ||||| | |||| |||
Sbjct 1591 TAATGGTGAAAGGGACACCTTACGATAATGT-AGATGACTTAGGTGATAGGGAGGATGAT 1649
Query 1457 TCTGGACCGTTGATCTCAGAAAACGTTATAGGAGTCGTCCACGATCATTTTATATCGTTT 1516
|||||||||||||||| || || || || |||||||| || |||||||| ||| |||||
Sbjct 1650 GCTGGACCGTTGATCTCTGAGAATGTGATTGGAGTCGTTCATGATCATTTCATAACGTTT 1709
Query 1517 CATCTAGACATGGACATTGACGGGTCAG-CCAACAACTCCTTCGTTAAGGTTCATCTAGA 1575
|||||||||||||| ||||| || | | || || || || |||||||||||||||||
Sbjct 1710 CATCTAGACATGGATATTGA-TGGACCGATGAATAATTCTTTGGTTAAGGTTCATCTAGA 1768
Query 1576 GAAGCAGAGACTTCCGCCTGGAAAATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATA 1635
|||||||||| |||| | |||||||| || ||||||||||||||||||||||||||
Sbjct 1769 GAAGCAGAGAGTTCCAACAGGAAAATCGCCAAGGAAGAGTTACTTGAAGGTCAAGAAATA 1828
Query 1636 TGTAGCCAAGACTGAGAAAGATGCTCAGATCAAATTGAGCCTGTATGACCCCTACGAGTT 1695
| ||||||||||||||||||||||||||||||| |||||||| |||||||| || || ||
Sbjct 1829 TATAGCCAAGACTGAGAAAGATGCTCAGATCAAGTTGAGCCTCTATGACCCATATGAATT 1888
Query 1696 CCATTTTGTGAACCCTAACAGGCGGTCTCGTTTAGGGAACCCGGCTGGTTACAAGCTTGT 1755
||| |||||||||| ||| | ||||| |||| |||||||||||||||| | | ||
Sbjct 1889 CCACATTGTGAACCCGAACCGAAAATCTCGGGTAGGAAACCCGGCTGGTTACAGGATCGT 1948
Query 1756 GCCTGGTGGTAATGCTGCAAGTTTGCTCGATCATGATGATCCACCTCAAATTAGAGGCGC 1815
|| ||||||||||| || |||||||| ||||| |||||||| ||||||||| |||| ||
Sbjct 1949 ACCGGGTGGTAATGCAGCGAGTTTGCTTGATCACGATGATCCTCCTCAAATTCGAGGTGC 2008
Query 1816 TTTCACAAACAATCAGATATGGGTGACTCGGTATAACAGATCAGAGCAATGGGCCGGAGG 1875
||||| || ||||||||||||||||||| |||||| | ||||| |||| ||||||||
Sbjct 2009 ATTCACTAATAATCAGATATGGGTGACTCCATATAACCGGTCAGAACAATATGCCGGAGG 2068
Query 1876 -GCTTTTGATGTACCAGAGCCGTGGTGAAGACACACTACAAGTTTGGTCCGACAGAGATC 1934
| || | || |||||||||| ||||| |||||||||||||||||||| ||| | || |
Sbjct 2069 AG-TTCTAATTTACCAGAGCCAAGGTGATGACACACTACAAGTTTGGTCAGACCGGGACC 2127
Query 1935 GTTCCATTGAGAACAAGGACATAGTGTTGTGGTATACACTAGGATTCCATCACATACCGT 1994
|||| || || |||||||||||||| ||||||| |||||||| ||||||||| |||| |
Sbjct 2128 GTTCGATCGAAAACAAGGACATAGTACTGTGGTACACACTAGGGTTCCATCACGTACCTT 2187
Query 1995 GCCAAGAAGATTTTCCAGTTATGCCAACAATAGCATCTAGCTTCGAACTGAAACCGGTCA 2054
| |||||||||| ||||||||||||||| | || ||||||| ||||| ||||| | ||
Sbjct 2188 GTCAAGAAGATTATCCAGTTATGCCAACCGTTGCGGCTAGCTTTGAACTTAAACCAG-CA 2246
Query 2055 A-TTTCTTCGAATCGAACCCGGTACTTGGGATCT-CACCTTTCTTCGAGAAAGACTTACC 2112
| |||||| ||||| || ||| | |||||| ||| | ||||||||||| |||||||||||
Sbjct 2247 AATTTCTTTGAATCCAATCCGATTCTTGGG-TCTGCTCCTTTCTTCGAAAAAGACTTACC 2305
Query 2113 ACCAGTCTGTTGACCGGATCCTTCATCTT 2141
|||||| |||| | |||||||||
Sbjct 2306 G---GTCTGTAGACCATTTGCTTCATCTT 2331
> AT3G43820.1 | Symbols: | pseudogene, copper amine oxidase protein
family, similar to SP|Q43077 Amine oxidase (copper-containing)
precursor (EC 1.4.3.6) {Pisum sativum}; contains Pfam
profile PF01179: Copper amine oxidase, enzyme domain; blastp
match of 57% identity and 2.6e-48 P-value to GP|5733089|gb|AAD49420.1|AF172681_1|AF172681
amine oxidase {Canavalia lineata}
| chr3:15668523-15669776 REVERSE LENGTH=1254
Length=1254
Score = 431 bits (233), Expect = 2e-119
Identities = 359/416 (86%), Gaps = 24/416 (6%)
Strand=Plus/Plus
Query 1423 AAACGTCA-AAGACTTGGGTGAGAAAGAGGCGGATTCTGGACCGTTGATCTCAGAAAACG 1481
|||||| | ||||||||||||||||||| || ||||||||| ||||||| | ||||||
Sbjct 411 AAACGT-ACAAGACTTGGGTGAGAAAGACGCTAATTCTGGACTTTTGATCTAAAAAAACG 469
Query 1482 TTATAGGAGTCGTCCACGATCATTTTATATCGTTTCATCTAGACATGGACATTGACGGGT 1541
|||||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 470 TTATAGGAGTGGTCCACGATC-------A---TTTCATCTAGACATGGACATTGACGGGC 519
Query 1542 CAGCCAACAACTCCTTCGTTAAGGTTCATCTAGAGAAGCAGAGACTTCCGCCTGGAAAAT 1601
|||| || |||| | ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 520 CAGCTAAGAACT-C--CGTTAAGATTCATCTAGAGAAGCAGAGACTTCCACCTGGAAAAT 576
Query 1602 CAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATATGTAGCCA--AG-ACTGAGAAAGATG 1658
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 577 CAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATATGTAGCCTGCAGGACTGATAAAGATG 636
Query 1659 CTCAGATCAAA-TTGAGCCTGTATGACCCCTACGAGTTCCATTTTGTGAACCCTAACAGG 1717
||||||| ||| ||||||||||| ||||| |||||||||||| |||||||||||||| ||
Sbjct 637 CTCAGAT-AAAGTTGAGCCTGTACGACCCTTACGAGTTCCATCTTGTGAACCCTAACCGG 695
Query 1718 CGGTCTC-GTTTAGGGAACCCGGCTGGTTACAAGCT-TGTGCCTGGTGGTAATGCTGCAA 1775
| |||| ||| ||| ||| ||| ||||||||||| | | ||| |||||||||||||||
Sbjct 696 CAGTCTTAGTTAAGG-AACTTGGCCGGTTACAAGCTCT-TACCTAGTGGTAATGCTGCAA 753
Query 1776 GTTTGCTCGATCATGATGATCCACCTCAAATTAGAGGCGCTTTCACAAACAATCAG 1831
|||| |||||| |||||||||| || || |||||||| ||||||||||||||||||
Sbjct 754 GTTTACTCGATAATGATGATCCGCCACATATTAGAGGGGCTTTCACAAACAATCAG 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110893003905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5