BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484810
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43720.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 1096 0.0
> AT3G43720.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr3:15615386-15617149
REVERSE LENGTH=795
Length=795
Score = 1096 bits (593), Expect = 0.0
Identities = 720/780 (92%), Gaps = 14/780 (2%)
Strand=Plus/Plus
Query 1 TTTTCTTCTCTCAAACCAACGC-AAAGAACAATGTCTAACGTTGTAGTAATCGCCGTTGT 59
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 20 TTTTCGTCTCTCAAACCAACGCAAAAGAACAATGTCTAACGTTGTAGTAATCGCCGTTGT 79
Query 60 TCTCATCACAGCCTCACTAACAGGACATGTGTCAGCACAAATGGATATGTCTCCATCGTC 119
||||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 80 TCTCATCGTAGCATCGCTAACAGGACATGTGTCAGCACAAATGGATATGTCTCCGTCGTC 139
Query 120 AGGACCGTCGGGAGCACCAGACTGCATGGCGAACCTAATGAACATGACGGGCTGTCTTTC 179
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 140 AGGACCATCGGGTGCACCAGACTGCATGGCGAACCTAATGAACATGACAGGCTGTCTCTC 199
Query 180 GTACGTTACGGTCGGAGAAGGCGGAGGCGCGGCTAAGCCGGACAAGACTTGTTGTCCGGC 239
||||||||||||||||||||| || || ||||| |||||||||||||| |||||||||||
Sbjct 200 GTACGTTACGGTCGGAGAAGGTGGTGGTGCGGCCAAGCCGGACAAGACGTGTTGTCCGGC 259
Query 240 GTTGGCGGGGCTGGTGGAGAGCTCGCCGCAATGCTTATGTTACCTTCTCTCCGGTGACAT 299
| | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 260 GCTAGCGGGGCTAGTGGAGAGCTCGCCGCAATGCTTATGTTACCTCCTCTCCGGTGACAT 319
Query 300 GGCGGCTAC-GCTTGGAATCAAGATTGATAAGGCAAAGGCTCTCAAACTTCCCGGAGTTT 358
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GGCGGC-ACAACTTGGAATCAAGATTGATAAGGCAAAGGCTCTCAAACTTCCCGGAGTTT 378
Query 359 GCGGCGTCCTCACTCCGGATCCATCACTTTGTTCTCTTTTTGGTATTCCAGTTGGAGCAC 418
||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 379 GCGGCGTGATCACTCCCGATCCTTCACTTTGTTCTCTTTTTGGAATTCCTGTTGGAGCAC 438
Query 419 CGGTAGCTATGGGCA-ACGAGGGAGCCTCCCCAGCCTATGCTCCAGGTTCGATGTCAGGT 477
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CTGTAGCTATGGG-AGACGAGGGAGCCTCCCCAGCCTATGCTCCAGGTTCGATGTCAGGT 497
Query 478 GCAGAATCACCATCACCAGGAGGATTTGGGTCGGGTCCTTCGGCTAGCAAAAGAGCAAGC 537
|||||||||||| ||||||||||||||||||||||||||||| | | | | | ||
Sbjct 498 GCAGAATCACCA------GGAGGATTTGGGTCGGGTCCTTCGGCTAGTAGAGG-G-A-GC 548
Query 538 GGTGCATCAAGCACCGCATCTTATTCTCTTTTTCTCAATCTTATAATTTTCCCATTAGCT 597
| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GATGCACCAAGCAGTGCACCTTATTCTCTTTTTCTCAATCTTATAATTTTCCCATTAGCT 608
Query 598 TTTGTGTTTTATATCTATTGCTGATTTCTTTTTCTTCCAACCATTAACAACACCATTATT 657
|||| ||||| |||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 609 TTTGCATTTTACATCTTTTGCTGATTTCATTCTCTTCCAACCATTAACAACACCATTATT 668
Query 658 TGTAATGTATTTTCTTAAAAGAGTATTGTTGCTTTTGTAGGCTATGTCCTTGAATTTATT 717
||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 669 TGTTATGTATTTTCTTAAAAGAGTATTATTGCTTTTGTAGGCTATGTTCTTGAATTTATT 728
Query 718 ACTTTGTGTGTCCGCGGATTATTTCTTCATTCATCTTATTGAATAAAGATTGtttttttt 777
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ACTTTGTGTATCCACGGATTATTTCTTCATTCATCTTATTGAATAAAGATTGTTTTTTTT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5