BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484812
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43740.2 | Symbols: | Leucine-rich repeat (LRR) family prot... 1173 0.0
AT5G21090.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 268 4e-71
> AT3G43740.2 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:15644054-15645446 FORWARD LENGTH=820
Length=820
Score = 1173 bits (635), Expect = 0.0
Identities = 756/814 (93%), Gaps = 10/814 (1%)
Strand=Plus/Plus
Query 1 AAACTTGTAAAAGGGTTTGAAAAAGTGAGATTACGAAACCCTAATTCTCTCTCCGGC-AA 59
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||
Sbjct 10 AAACTTGTAAAAGGGTTTGAAAAAGTCAGATTACGAAACCCTAGTTCTCTCTCCGGCGAA 69
Query 60 CAACTATGGTGGCGCAAAACAGTCGACGGGAGCTTCTAGCAGCTTCTCTAATCCTAACCT 119
||| |||||||||||||||||||| |||||||||||||||||||| || |||||||| |
Sbjct 70 -AACCATGGTGGCGCAAAACAGTCGGCGGGAGCTTCTAGCAGCTTCCCTGATCCTAACTT 128
Query 120 TAGCTCTAATTCGTTTAACAGAAGCAAACTCCGAAGGCGACTCTCTTCACGCTCTTCGTC 179
|||||||||||||| |||| ||||||||||||||||| ||| |||||||||| ||||| |
Sbjct 129 TAGCTCTAATTCGTCTAACGGAAGCAAACTCCGAAGGGGACGCTCTTCACGCGCTTCGCC 188
Query 180 GGAGCTTATCAGATCCAGACAATGTTCTTCAAAGCTGGGATCCAACTCTTGTTAATCCTT 239
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 189 GGAGCTTATCAGATCCAGACAATGTTGTTCAGAGTTGGGATCCAACTCTTGTTAATCCTT 248
Query 240 GTACCTGGTTCCATGTTACTTGTAATCAACACAACCAAGTCACTCGACTGGATTTGGGGA 299
|||| ||||| ||||| ||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 249 GTACTTGGTTTCATGTCACTTGTAATCAACACCATCAAGTCACTCGTCTGGATTTGGGGA 308
Query 300 ATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAGTATC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 309 ATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATC 368
Query 360 TGTATGGAATCATCACTCTTTTGCCTTTTGATTATCTGAAAACTTACTTTTCGATTACCA 419
||||||||||||||||||||||||||||||||||||||||||| | ||| | |||| ||
Sbjct 369 TGTATGGAATCATCACTCTTTTGCCTTTTGATTATCTGAAAAC--A-TTTAC-ATTATCA 424
Query 420 ACCA-A-ATTTTA--TTTTGCTTTGATTCATATAGTGAACTCTACAAAAACGAGATTCAA 475
|| | || | | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 425 GTCACACATATAACATTTTGCTTTGAGTCATATAGTGAACTCTACAAAAACGAGATTCAA 484
Query 476 GGAACTATACCTTCTGAGCTTGGAAATCTGAAGAGTCTGATCAGTTTGGATCTGTACAAC 535
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 485 GGAACTATACCTTCTGAGCTTGGAAATCTGAAGAGTCTAATCAGTTTGGATCTGTACAAC 544
Query 536 AACAATCTCACCGGGAAAATTCCATCGTCTTTGGGAAAATTGAAGTCACTTGTCTTTCTA 595
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |
Sbjct 545 AACAATCTCACCGGGAAAATCCCATCTTCTTTGGGAAAATTGAAGTCACTTGTTTTTTTG 604
Query 596 CGGCTTAACGAAAACCGATTGACCGGTCCAATTCCTAGAGAACTCACGGCTATCTCATGC 655
||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||| ||
Sbjct 605 CGGCTTAACGAAAACCGATTGACCGGTCCTATTCCTAGAGAACTCACAGTTATTTCAAGC 664
Query 656 CTCAAAGTTGTTGATGTCTCAGGCAATGATTTGTGTGGAACGATCCCAGTAGAAGGACCT 715
|| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 665 CTTAAAGTTGTTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCT 724
Query 716 TTTGAACACATTCCTATGCAAAACTTTGAGAACAACCTGAGACTAGAGGGACCAGAACTA 775
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 725 TTTGAACACATTCCTATGCAAAACTTTGAGAACAACCTGAGATTGGAGGGACCAGAACTA 784
Query 776 CTAGGTCTTGCGAGCTACGACACCAATTGCACTT 809
||||||||||||||||| ||||||||||||||||
Sbjct 785 CTAGGTCTTGCGAGCTATGACACCAATTGCACTT 818
> AT5G21090.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:7164603-7167255 FORWARD LENGTH=1163
Length=1163
Score = 268 bits (145), Expect = 4e-71
Identities = 237/280 (85%), Gaps = 12/280 (4%)
Strand=Plus/Plus
Query 87 GGGAGCTTC-TAGCAGCTTC-TCTAATCCTAACCTTAGCTCTAATTC-GTTTAACAGAAG 143
|||||| || | |||||||| | ||| ||||||||||||| | |||| | | ||||
Sbjct 178 GGGAGC-TCTTCGCAGCTTCGT-TAACCCTAACCTTAGCTTTGATTCACCTGGTC-GAAG 234
Query 144 CAAACTCCGAAGGCGACT-CTCTTC-ACGCTCTTCGTCGGAGCTT-ATCAGATCCAGACA 200
||||||||||||| || | ||| || |||||||||| ||||| || | |||||||||||
Sbjct 235 CAAACTCCGAAGGAGA-TGCTC-TCTACGCTCTTCGCCGGAGTTTGA-CAGATCCAGACC 291
Query 201 ATGTTCTTCAAAGCTGGGATCCAACTCTTGTTAATCCTTGTACCTGGTTCCATGTTACTT 260
|||| || || |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 292 ATGTCCTCCAGAGCTGGGATCCAACTCTTGTTAATCCTTGTACCTGGTTCCATGTCACCT 351
Query 261 GTAATCAACACAACCAAGTCACTCGACTGGATTTGGGGAATTCAAACTTATCTGGACATC 320
|||| ||| |||||| |||||||| |||||||||| ||||||||| | ||||||||||
Sbjct 352 GTAACCAAGACAACCGCGTCACTCGTGTGGATTTGGGAAATTCAAACCTCTCTGGACATC 411
Query 321 TAGTACCTGAACTTGGGAAGCTTGAACATTTACAGTATCT 360
| | ||||| |||||||||||||||||||||||||||||
Sbjct 412 TTGCGCCTGAGCTTGGGAAGCTTGAACATTTACAGTATCT 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5