BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484816
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43790.3 | Symbols: ZIFL2 | zinc induced facilitator-like 2 ... 2316 0.0
> AT3G43790.3 | Symbols: ZIFL2 | zinc induced facilitator-like
2 | chr3:15655384-15660086 FORWARD LENGTH=1771
Length=1771
Score = 2316 bits (1254), Expect = 0.0
Identities = 1413/1488 (95%), Gaps = 18/1488 (1%)
Strand=Plus/Plus
Query 1 ATCAACCACTCCGACTCAGTGGTTCCGATCATGGCCGATGATGAGTCACGTACCATCCTG 60
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 30 ATCAACCAGTCCGACTCAGTGGTTCCGATCATGGCCGATGATGAGTCAAGAACCATCCTG 89
Query 61 TTGGAGAAGAACGAAGATTGCCCTGGTTGTGTCATTGATCGAACTAAGCAAGATCAACGT 120
||||||||||||||||| |||||||| ||| ||||||||||||| |||||| | |||||
Sbjct 90 TTGGAGAAGAACGAAGACTGCCCTGGCTGTATCATTGATCGAACCAAGCAACAGCAACGA 149
Query 121 GGCGTCCCTTACTTCCACCTCTCCTTCATCTGGCTCGTCTCACTCTGCACCGCTCTTCCA 180
||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 150 GGCGTTCCTTACTTGCACCTCTCCTTCATCTGGCTCGTGTCACTCTGCACTGCTCTTCCA 209
Query 181 ATATCTTCACTGTTTCCATATCTTTATTTCATGATCAGAGACTTCCATATTGCAAAACAA 240
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 210 ATATCTTCACTGTTTCCATATATTTATTTCATGATCAGAGACTTCCATATAGCAAAACAA 269
Query 241 GAAGAAGATATTGGTTTCTATGCTGGTTTTGTTGCATCATCATTCATGATTGGAAGAGCT 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 270 GAAGAAGATATTGGTTTCTATGCTGGTTTTGTTGGATCATCATTCATGATTGGAAGAGCT 329
Query 301 TTGACATCTATTTTCTGGGGGAAATTAGCTGATCGATATGGTCGCAAACCTATTATTCTG 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 330 TTGACATCTATTTTCTGGGGGAAATTAGCTGATCGTTATGGTCGCAAACCTATTATTCTC 389
Query 361 ATTGGGACATTCTCAGTGATCATATTCAATACCCTCTTTGGTCTAAGCACAAGTTTCTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 ATTGGGACATTCTCAGTGATCATATTCAATACCCTCTTTGGTCTAAGCACAAGTTTCTGG 449
Query 421 CTTGCAATTTCCGTTAGATTTCTTCTCGGCTGCTTCAATTGTCTACTTGGAGTTATAAGG 480
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 450 CTTGCAATTTCCGTTAGATTTCTTCTTGGCTGCTTCAATTGTTTACTTGGAGTTATAAGA 509
Query 481 GCATATGCTTCGGAAGTCGTTAGTGAAGAGTATAACGCTCTTAGTCTTTCTGTTGTGAGT 540
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 510 GCATATGCTTCAGAAGTCGTTAGCGAAGAGTATAACGCTCTTAGTCTTTCTGTCGTGAGT 569
Query 541 ACATCGAGAGGTATAGGATTGATACTAGGTCCTGCTATTGGAGGCTATCTTGCTCAGCCT 600
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 570 ACATCAAGAGGTATAGGATTGATACTAGGTCCTGCTATTGGAGGTTATCTTGCTCAGCCT 629
Query 601 GCAGAAAAGTACCCAAATATATTTTCCCAGAGTTCAGTTTTTGGGAGGTTTCCATATTTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 GCAGAAAAGTACCCAAATATATTTTCCCAGAGTTCAGTTTTTGGGAGGTTTCCATATTTT 689
Query 661 CTGCCGAGCTTAGTTATATCAGTCTATGCTACTGGGGTTCTCATCGCCTGCTGGTGGCTT 720
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 690 CTGCCGAGCTTAGTTATATCCGTCTATGCTACTGCGGTTCTCATCGCTTGCTGGTGGCTT 749
Query 721 CCTGAAACACTTCATACCCGTTGTAGAATTGCACAAGGGAGACTTAATCCAACTGAGCTA 780
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 750 CCTGAAACTCTTCATACACGTTGTAGAATTGCACAAGGGAGACTTAATCCAACAGAGCTA 809
Query 781 AACGATGATGAAAGCAGAGGAGGAGGACTTGATGACCAGAAAATAATTAGTAAGCCAAGT 840
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 810 AACGATGATGAAAGTAGAGGAGGAGGACTTGATGAACAGAAAATAATTAATAAGCCAAGT 869
Query 841 CTCTTGAGAAATCGTCCATTGATGGCTATCATCATCGTGTATTGTGTCTTTTCCCTTCAA 900
|||||||| |||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 870 CTCTTGAGGAATCGTCCATTGATGGCTATCATCATTGTTTATTGTGTTTTTTCCCTCCAA 929
Query 901 GAGATAGCTTACAATAAGATATTCTCACTCTGGGCTGTTAGTGACCGAAGCTATGGAGGA 960
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GAGATAGCATACAATGAGATATTCTCACTCTGGGCTGTTAGTGACCGAAGCTATGGAGGA 989
Query 961 TTGAGCTTCTCATCTCAAGATGTTGGTGAAGTTTTAGCTATATCAGGATTTGGGCTTCTG 1020
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 990 TTGAGCTTCTCATCTCAAGATGTTGGTGAAGTTTTAGCTATATCAGGACTTGGGCTTCTG 1049
Query 1021 GTGTTTCAACTTTTGGTATACCCGCCGTTGGAGAAGTCCGTTGGACTCCTTGCGATTATA 1080
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |||||
Sbjct 1050 GTGTTTCAACTTTTGGTATACCCGCCATTGGAGAAATCCGTGGGACTCCTTGCGGTTATA 1109
Query 1081 CGTCTTTCTGCGGTATTGCTGATACCTCTGCTTTCGTGTTACCCCTATATAGCTTTGCTT 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1110 CGTCTTTCTGCGGTATTGCTGATACCGCTGCTTTCGTGTTACCCCTATATAGCTTTGCTT 1169
Query 1141 TCTGGGGTGACCCTCCATTTGGTGATAAATTGTGCATCCATCATAAAAAACGCTTTGTCA 1200
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TCTGGGGTGACTCTCCATTTGGTGATAAATTGTGCATCCATCATAAAAAACGCTTTGTCT 1229
Query 1201 ATCTCACTTGTCACAGGACTGTTTATCATGTTGAACAAAGCCGTGCCTCAGAATCAGAGA 1260
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1230 ATCTCACTTGTCACAGGACTGTTTATCATGTTGAACAAAGCTGTGCCTCAGAATCAGAGA 1289
Query 1261 GGTGCTGCTAATGGCATTTCTATGACCGCAATGTCTGTTTTCAAATCATTTGGCCCTGCC 1320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1290 GGTGCTGCTAATGGCATTTCTATGACCGCGATGTCTGTTTTCAAATCATTTGGCCCTGCC 1349
Query 1321 GGTGGAGGGGTCTTATTCTCATGGGCGCAAAAGAGACAAGACGCTACTTTCCTTCCAGGT 1380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1350 GGTGGAGGGGTCTTATTCTCATGGGCGCAAAAGAGACAAGACGCTACATTCCTTCCAGGT 1409
Query 1381 ---------G-AC---G--A-GA--TGGTGTTCTTGGTGTTGAACTTGGTACAGCTCGTA 1422
| || | | || ||||||||||||||||||| |||||||||||||||
Sbjct 1410 CAAATTTTTGCACCATGTGATGAGATGGTGTTCTTGGTGTTGAATTTGGTACAGCTCGTA 1469
Query 1423 GGATTGATTCTAACGTTCGTACCTTACATTTCCCAAATCCAGTAAAAG 1470
|||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1470 GGATTGATACTAACGTTCATACCTTACATTTCCCAAATCCAGTAAAAG 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5