BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484819
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43810.1 | Symbols: CAM7 | calmodulin 7 | chr3:15664371-1566... 1103 0.0
AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-1153... 486 1e-136
AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-1714... 368 4e-101
> AT3G43810.1 | Symbols: CAM7 | calmodulin 7 | chr3:15664371-15666460
REVERSE LENGTH=803
Length=803
Score = 1103 bits (597), Expect = 0.0
Identities = 710/761 (93%), Gaps = 21/761 (3%)
Strand=Plus/Plus
Query 1 GAACATTCACTCTCACGCGCTTCAACTTTCT-CAGAAACAAGAAAAAT-TCACTGC-AAA 57
||||||||||||||||||||||||||||||| |||||||||| ||||| |||| || |||
Sbjct 13 GAACATTCACTCTCACGCGCTTCAACTTTCTCCAGAAACAAG-AAAATATCACAGCAAAA 71
Query 58 ATTTTCTCGAGAAAATCCGAAG--Ca-aaaaaaaaTGGCGGATCAGCTTACCGATGACCA 114
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 72 ATTTTCTCGAGAAAATCCGAAGAAGACAAAAAAAATGGCGGATCAGCTAACCGATGACCA 131
Query 115 GATCTCCGAGTTCAAGGAAGCTTTCAGCCTCTTCGACAAAGACGGAGATGGTTGCATCAC 174
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 132 GATCTCCGAGTTCAAGGAAGCTTTTAGCCTATTCGACAAAGACGGAGATGGTTGTATCAC 191
Query 175 TACAAAGGAGCTTGGGACTGTGATGAGATCACTCGGGCAGAACCCAACAGAAGCTGAGCT 234
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 192 CACAAAGGAGCTTGGGACTGTGATGAGATCACTTGGGCAGAACCCGACAGAAGCCGAGCT 251
Query 235 TCAGGACATGATCAACGAAGTAGATGCAGATGGGAACGGGACAATAGATTTCCCGGAGTT 294
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 252 CCAGGACATGATCAACGAAGTGGATGCAGACGGGAACGGGACAATAGATTTCCCAGAGTT 311
Query 295 CCTGAACCTTATGGCACGGAAGATGAAAGACACTGATTCAGAGGAGGAGCTTAAGGAAGC 354
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 312 CCTGAACCTAATGGCACGTAAGATGAAAGACACTGATTCAGAGGAAGAGCTTAAGGAAGC 371
Query 355 CTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCAGCTGAGCTTCGTCACGT 414
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 372 CTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCGGCTGAGCTTCGTCACGT 431
Query 415 GATGACAAATCTTGGGGAGAAGCTGACAGATGAGGAAGTCGATGAGATGATCCGAGAGGC 474
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 432 GATGACAAATCTTGGGGAGAAGTTGACGGATGAGGAAGTCGATGAGATGATCCGAGAGGC 491
Query 475 TGATGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAAGTCATGATGGCAAA 534
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TGACGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAAGTCATGATGGCAAA 551
Query 535 GTGAGAATCTTCTTATCCCTCGAAATCCCAAGTC-TGTTTATTTATTTT-CGTCTTTAAA 592
|||||| ||||||||||||||||||||| ||| | ||||| || |||| | ||||||||
Sbjct 552 GTGAGATTCTTCTTATCCCTCGAAATCCTAAG-CATGTTT-TTC-TTTTACATCTTTAAA 608
Query 593 -CTGAGAAAAGTAATTTATTGAACCAAAAGAAACAGAGAGATTTGCTTCGTTGTTTGTTT 651
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 609 ACTGAGAAAAGTAATTTATTGAACCAAAAGAAACAGAGAGATTTGCTTCCTTGTTTGTTT 668
Query 652 TGTTGGTCGTAATTTTTTGGTAACGTTGCTTCTTCTTTACCTTCATCTTCGGTTTTGTTA 711
||||| |||| ||||||||||||||||||||||||||| |||| | | ||||||||||
Sbjct 669 TGTTGATCGTGATTTTTTGGTAACGTTGCTTCTTCTTTGCCTT--T-T--GGTTTTGTTA 723
Query 712 T-GTCCGTGAAGTTTGAACTCA-AAGTTTGCTTTAGTCTCT 750
| |||||||| ||||||||||| || |||||||||||||||
Sbjct 724 TTGTCCGTGACGTTTGAACTCATAA-TTTGCTTTAGTCTCT 763
> AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-11534333
FORWARD LENGTH=768
Length=768
Score = 486 bits (263), Expect = 1e-136
Identities = 393/456 (86%), Gaps = 8/456 (2%)
Strand=Plus/Plus
Query 84 aaaaaaTGGCGGATCAGCTTACCGATGACCAGATCTCCGAGTTCAAGGAAGCTTTCAGCC 143
|||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 61 AAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTTTAGCC 120
Query 144 TCTTCGACAAAGACGGAGATGGTTGCATCACTAC-AAAGGAGCTTGGGACTGTGATGAGA 202
| ||||||||||||||||||||||||||||| || ||| ||||| || || |||||||||
Sbjct 121 TTTTCGACAAAGACGGAGATGGTTGCATCACAACGAAA-GAGCTAGGAACAGTGATGAGA 179
Query 203 TCACTCGGGCAGAACCCAACAGAAGCTGAGCTT-CAGGACATGATCAACGAAGTAGATGC 261
||| | || || || ||||||||||| ||| || || || ||||| ||||||||||||||
Sbjct 180 TCATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAAGTAGATGC 238
Query 262 AGATGGGAACGGGACAATAGATTTCCCGGAGTTCCTGAACCTTATGGC-ACGGAAGATGA 320
||||| ||||| || ||||| ||||| ||||| |||||||| ||||| | |||||||||
Sbjct 239 TGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTGAACCTAATGGCTA-GGAAGATGA 297
Query 321 AAGACACTGATTCAGAGGAGGAGCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGA 380
| |||||||| || || || ||||| || ||||| ||||||||||| || ||||||||||
Sbjct 298 AGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAGA 357
Query 381 ACGGTTTCATCTCGGCAGCTGAGCTTC-GTCACGTGATGACAAATCTTGGGGAGAAGCTG 439
||||||||||||||||||||||| || | || || |||||||||||||| |||||| |
Sbjct 358 ACGGTTTCATCTCGGCAGCTGAG-TTAAGACATGTAATGACAAATCTTGGTGAGAAGTTA 416
Query 440 ACAGATGAGGAAGTCGATGAGATGATCCGAGAGGCTGATGTCGATGGTGATGGTCAGATC 499
|| ||||| ||||| |||||||||||| ||| |||||||| ||||| ||||||||||||
Sbjct 417 ACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGATC 476
Query 500 AACTATGAAGAGTTCGTCAAAGTCATGATGGCAAAG 535
|| ||||||||||| |||||||| ||||||||||||
Sbjct 477 AATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
> AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-17141393
FORWARD LENGTH=837
Length=837
Score = 368 bits (199), Expect = 4e-101
Identities = 320/379 (84%), Gaps = 6/379 (2%)
Strand=Plus/Plus
Query 164 GGTTGCATCACTACAAAGGAGCTTGGGACTGTGATGAGATCACTCGGGCAGAACCCAACA 223
|||||||| || |||||||||||||| || |||||| | || ||||| || ||||||||
Sbjct 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321
Query 224 GAAGCTGAGCTTCAGGACATGATCAACGAAGTAGATGCAGATGGGAACGGGACAATAGAT 283
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| || || |||
Sbjct 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381
Query 284 TTCCCGGAGTTCCTGAACCTTATGGC-ACGGAAGATGAAAGACACTGATTCAGAGGAGGA 342
|||||||||||| ||||||| ||||| | |||| ||||| |||||||| || ||||| ||
Sbjct 382 TTCCCGGAGTTCTTGAACCTAATGGCTA-GGAAAATGAAGGACACTGACTCTGAGGAAGA 440
Query 343 GCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCAGCTGA 402
|| |||||||| ||||| ||||| ||||| |||||||||||||||||||| || |||||
Sbjct 441 ACTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500
Query 403 GCTTC-GTCACGTGATGACAAATCTTGGGGAGAAGCTGACAGATGAGGAAGTCGATGAGA 461
|| | || |||||||| || || || |||||||| || ||||| ||||| |||||||
Sbjct 501 A-TTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGA 559
Query 462 TGATCCGAG-AGGCTGATGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAA 520
|||| || | |||||||| ||||||||||||||||||||||| |||||||| || ||
Sbjct 560 TGATTA-AGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAG 618
Query 521 GTCATGATGGCAAAGTGAG 539
|| |||||||| |||||||
Sbjct 619 GTTATGATGGCTAAGTGAG 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5