BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484821
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43860.1 | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 ... 3066 0.0
> AT3G43860.1 | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4
| chr3:15706994-15709789 FORWARD LENGTH=2001
Length=2001
Score = 3066 bits (1660), Expect = 0.0
Identities = 1844/1931 (95%), Gaps = 20/1931 (1%)
Strand=Plus/Plus
Query 1 aaaacaagaaaaaacgaaaagcatgcaattgtttttcgttttttgttgaaacaaaaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AAAACAAGAAAAAACGAAAAGCATGCAATTGTTTTTCGTTTTTTGTTGAAACAAAAAACA 75
Query 61 aacagaacttca-caaaaaaa-tacagagaaaaaaaaaGATTCAGTTTCCTTTTCTTTGT 118
||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 76 AACTTAACTTCACCAAAAAAACTAC--AGAAAAAAAAAGATTCAGTTTCCTTTTCTTTGT 133
Query 119 TTCCACTTCTTATATAAGAGTT-GGCATTTTTATTACAAACATTACATTTGAAATTATGG 177
||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||
Sbjct 134 CTCCACTTCTTATATAAGAGTTGGGCATTTTTATTACAAACATAACTTTTGAAATCATGG 193
Query 178 GTAATTATGGGGATAAAGGAAGAGGAAATGTTGTGATTA-GG-GCCATATTGTTGGGTCT 235
||| | | |||||||||||||||||||| ||| || || | ||| || ||||||||
Sbjct 194 CTAA-T-T----ATAAAGGAAGAGGAAATGTTATGA-TACGGAG-CATGTTATTGGGTCT 245
Query 236 CTATGGAATCATAAGCATTGTTTGTGTCAATGGTACTAACATAAACTACAAAGATGCTTT 295
|||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 246 CTATGGCATCATAAACATTGTGTGTGTCAATGGTACTTTCATAAACTACAAAGATGCTTT 305
Query 296 AACCAAATCCCTCATCTTCTTGGAGGCTCAAAGATCAGGCAAACTCCCTCCTAACAATAG 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 306 AACCAAATCCCTCATCTTCTTGGAGGCTCAAAGATCAGGCAAACTCCCTCCTAATAATAG 365
Query 356 GGTTCCATGGAGAGGTGATTCTGCTCTCGACGATGGCAAACTCGTAAATGTGGATTTGTC 415
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 366 GGTTCCATGGAGAGGTGACTCTGCTCTCGACGATGGCAAACTCGTAAATGTGGACTTGTC 425
Query 416 GGGAGGGTACTATGACGCAGGAGACAATGTAAAGTATGGTCTTCCAATGGCGTTTACGAT 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 426 TGGAGGGTACTATGACGCAGGAGACAATGTGAAGTATGGTCTTCCAATGGCGTTCACGAT 485
Query 476 CACAACGCTTGCTTGGTCTACCATTACCTATGAGAAAGAACTCCGAGCCACGGGAGAGCT 535
|||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||
Sbjct 486 CACAACGCTTGCTTGGTCCACAATTACCTACGAGAAAGAACTTCGAGCCACGGGAGAGCT 545
Query 536 CGAAAACGCTCGTGCTGCTATCCGTTGGGGTACAGATTATTTCCTCAAATGTGCTTCTCG 595
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 546 CGAAAACGCTCGTGCTGCTATCCGTTGGGGTACGGATTATTTCCTCAAATGTGCTTCTCG 605
Query 596 CAAGAACCGCCTCTATGTTCAGGTTGGTGATCCAAACGCGGACCACCAGTGCTGGGCGAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CAAGAACCGCCTCTATGTTCAGGTTGGTGATCCAAACGCGGACCACCAGTGCTGGGCGAG 665
Query 656 ACCCGAGAACATGAAGACGCCAAGGACGGTGTTGGAGATAAGCGATAAAGTTCCAGGAAC 715
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ACCTGAGAACATGAAGACACCAAGGACGGTGTTGGAGATAAGCGATAAAGTTCCAGGAAC 725
Query 716 CGAGATCGCTGCGGAAGCCGCCGCTGCATTCGCCGCTTCCTCCATCGTTTTCCGCCATGT 775
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 726 CGAGATCGCGGCGGAAGCCGCTGCTGCATTCGCCGCTTCCTCCATCGTTTTCCGCCATGT 785
Query 776 TGACCACAAATATGCACGCCGGCTTCTCAACAAAGCCAAATTGCTTTTCAAGCTAGCCAA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CGACCACAAATATGCACGCCGGCTTCTCAACAAAGCCAAATTGCTTTTCAAGCTAGCCAA 845
Query 836 AAGCCACAAGGGTACATACGATGGAGAATGCCCGTTTTATTGTTCTAACTCCGGTTACAA 895
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 846 AAGCCACAAGGGTACATACGATGGAGAATGCCCCTTCTATTGTTCTAACTCCGGTTACAA 905
Query 896 TGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATGATTTGTACCT 955
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 906 TGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATCATCTATACCT 965
Query 956 TAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTCGCTGAATTCAGCTGGGATCTCAA 1015
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 966 TAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTTGCCGAATTCAGCTGGGATCTCAA 1025
Query 1016 ATACGCTGGTGCGCAGATCCTCATCACTAAGTTGATCTTCGAAGGCGCA-AAAGGACTTG 1074
|||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 1026 GTACGCTGGTGCGCAGATCCTCATCACCAAGTTGATCTTCGAAGGC-CACAAAGGACTTG 1084
Query 1075 ATCTATACAAACAACAAGCAGATAGTTTTGTATGCTCTAATCTTCCC-GGAAGTCCTTAC 1133
||||||||||||||||||| |||||||||||||||||||| | |||| || |||||||||
Sbjct 1085 ATCTATACAAACAACAAGCCGATAGTTTTGTATGCTCTAA-CCTCCCTGGCAGTCCTTAC 1143
Query 1134 CACCAAGTTTTTACTACCCCAGGTGGTATGATTCACTTGAGGGATGGAGCCAACAGTCAA 1193
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1144 CACCAAGTCTTCACTACCCCAGGTGGTATGATTCACTTGAGGGATGGTGCCAACAGTCAA 1203
Query 1194 TATGTCACCGCCACCGCCTTCTTGTTCTCAACCTACGCTGATATACTACAGAAACACAAC 1253
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1204 TATGTCACCGCCACCGCCTTCTTGTTCTCGGCCTACGCTGATATACTACAGAAACACAAC 1263
Query 1254 CAAAAGATCTCTTGCGGTAGCCACCAATTCGATTCAACACACCTCATGGCTTTCGCTAAA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CAAAAGATCTCTTGCGGTAGCCACCAATTCGATTCAACACACCTCATGGCTTTCGCTAAA 1323
Query 1314 AAACAGATTGACTACATACTAGGGCATAACCCACAAGGAAGATCGTACATGGTTGGGTTC 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AAACAGATTGACTACATACTAGGGCATAACCCACAAGGAAGATCGTACATGGTTGGGTTC 1383
Query 1374 GGACCAAACCCACCAAAGCAAGCCCATCACAGAGGAGCCTCAGTGCCCATGCATGAAGCC 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 GGACCAAACCCACCAAAGCAAGCCCATCACAGAGGAGCCTCAGTGCCCATGCATGAAGCC 1443
Query 1434 AACGCGCCGTTAAGTTGCCCATTGAGCTTCGTGAAATGGTACAACAAGAACGTACCTAAC 1493
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 AACGCGCCGCTAAGCTGCCCATTGAGCTTCGTGAAATGGTACAACAAGAACGTACCTAAC 1503
Query 1494 GCTAACGAGCTCACCGGAGCCATCTTGGGAGGACCTGACCGTCAAGACAAGTTCCAGGAT 1553
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1504 GCTAACGAGCTCACCGGAGCCATTTTGGGAGGACCTGACCGTCAAGACAAATTCCAGGAT 1563
Query 1554 CTCCGATGGACTTCCGTGTACACAGAACCTTGCACTTACATCAACTCTATCGCCGTTGGT 1613
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1564 CTCCGATGGACCTCCGTGTACACAGAGCCTTGTACTTACATCAACTCTATCGCCGTTGGT 1623
Query 1614 GTTCTCGCCAAGCTCGCTGCGGCTTAGAGCCTTTTGTACCACATTCGAGACTACTTTGAT 1673
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GTTCTCGCTAAGCTCGCTGCGGCTTAGAGCCTTTTGTACCACATTCGAGACTACTTTGAT 1683
Query 1674 GAAA-GTATTCTTCTAGGGTTTCCCTTACCTACTAAAATTGCATACACCTGTGTGGCCAT 1732
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1684 GAAAAGTATTCTTCTAGGGTTTCCCTTACCTACTATAATTGCATACACCTTTGTGGCAAT 1743
Query 1733 GCAATGTAATTCTATTTTTCATTTTCTTTTGCCTTTGTAGGTAGCTTTTTGGAATCATGT 1792
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1744 GCAATGTAATTCTATTTTTCATTTTTTTTTGCCTTTGTAGGTAGCTTTTTGGAATCATGT 1803
Query 1793 TTTCTCCAAAATATAAAATTGCATGGGTATAATAATAAGCCCTAATGATTTGAAACAATA 1852
||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct 1804 TTTCTCCAAAATATAAAATTGCATGGGCATAATAATAAGCTCTAGTGATTTGAAACAATA 1863
Query 1853 ATTAAGTGAAATTAATGAATAGCCGGAAGGATAAAACTCATTCCGTTTCACGTAGATTGT 1912
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1864 ATTAAGCGAAATTAATGAATAGCCGGAATGATAATTCTCATTCCGTTTCACGTAGATTGT 1923
Query 1913 TGTTTTAAACT 1923
|||||||||||
Sbjct 1924 TGTTTTAAACT 1934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95280634410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5