BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484823
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 684 0.0
> AT3G43910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G26840.1);
Has 680 Blast hits to 680 proteins in 17 species: Archae -
0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 635 (source: NCBI BLink). | chr3:15751387-15752689
FORWARD LENGTH=588
Length=588
Score = 684 bits (370), Expect = 0.0
Identities = 532/605 (88%), Gaps = 31/605 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCAAGAATTGTTGAATCCTCTCTCTTATTCTTCACCAAACTACGACGAGGCGATT 60
||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 ATGAAGCAAAAATCGTTGAATCCTCTCTCTTCTTCTTCACCAAACTACGACGAGATGATT 60
Query 61 CAAGAGAATTTTAAGCCACACTGGATCATTGGGATTGACCCTACCTTGTCCGGAGCTTTG 120
|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 61 CAAGAGAATTTTAAGCCACATTGGATCATTGGGATTGACCCTAACTTATCCGGAGCTTTG 120
Query 121 GCTGTGCTGAAATTCGACGACAAGGGATCTTGTTCTGCTCAGGTATATGATACTCCTC-G 179
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 121 GCTGTGCTGAAATTCGACGACAAGGGATCTTGTTTTGCTCAGGTATATGATACTCCTCAG 180
Query 180 GCGGCAAGTTGTAGTTCAAAATATCCCAAGATC-TCGTTTCAAAGAAAAATCAATGCTAG 238
|| |||||||||||||||| |||| || | | | ||||||| ||||||||||||||||
Sbjct 181 TTGG-AAGTTGTAGTTCAAAACATCCGAACA-CGTAGTTTCAACGAAAAATCAATGCTAG 238
Query 239 AACTGATTCGTACTCTAGATGTTCCATCCGGAACCAAGGCATTTGTAGCGAAA-ATGATT 297
|||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 239 AACTGATTCGTAGTCTAGATGTTCCATCCGGAACCAAGGCATTTGTAGCGAAATAT-ATT 297
Query 298 C-TCTATGAAGACGACAATATCATGGCTGCCTACAATGCA-GGACTTGGATATGGATTAT 355
| || |||| ||| | || | | |||||||||||| | |||||||||| ||||||||
Sbjct 298 CATCC-TGAAAACG-CTAT-T-A---CTGCCTACAATG-ATGGACTTGGATGTGGATTAT 349
Query 356 GGACAGGAATACTTCTCACATCTAACATTTCTGTTAGTTCCGTTGCTCCTTCGACATGGA 415
||||| ||||||||||||| ||||||||||| || |||| ||||||| ||||||
Sbjct 350 GGACA------CTTCTCACATCTAGCATTTCTGTTATTTACGTTACTCCTTCTACATGGG 403
Query 416 AGAAACATTTTAAACTTAGTATTTATAGCCGGGATGGTGGCAGGAAACTCGCATTGAAAA 475
| ||||||||||| |||||||||| || |||||||||||||||||||||| || |||
Sbjct 404 ACAAACATTTTAATCTTAGTATTTGGAGTTTGGATGGTGGCAGGAAACTCGCACTGGAAA 463
Query 476 TGTTTCCATCACTTAGTTCCCAATTGACAAGGAGAAG-G--GACTATGCTCGAGCTAATG 532
||||||||||||||| ||||||||| || || | ||| |||||||||||||||
Sbjct 464 TGTTTCCATCACTTA------AATTGACAACGAAAATTGACGACAATGCTCGAGCTAATG 517
Query 533 CACTACTCATTGCTGCATATGGTCATGCTACAAGTGAAACAAAATATTACTCATTTTCTC 592
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 518 CACTACTCATTGCTGCATATGGTCATGCTACAAGTGATACAAGATATTACTCATTTTCTC 577
Query 593 AAATT 597
|||||
Sbjct 578 AAATT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5