BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484825
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43930.1 | Symbols: | BRCT domain-containing DNA repair pro... 1051 0.0
> AT3G43930.1 | Symbols: | BRCT domain-containing DNA repair protein
| chr3:15760817-15763330 REVERSE LENGTH=1707
Length=1707
Score = 1051 bits (569), Expect = 0.0
Identities = 798/903 (88%), Gaps = 37/903 (4%)
Strand=Plus/Plus
Query 1 AATCTTCGTCCTCTTCCTTGAACACCAAGATTCAAACATATTTTCTTATGGAAGGTGTTA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 AATCTTCGTCCTCTTCCTTGAACTCCAAGATTCAAACATATTTTCTTATGGAAGGTGTTA 80
Query 61 GAAGAGCAGAGGTGATCGTTACCAAGAGATGTTCGAAGCTGCGCGTGGAGTTCACGCCTT 120
|||||||||||||||| | ||| ||||| |||||||||||||||||||| |||||||| |
Sbjct 81 GAAGAGCAGAGGTGATTGATACAAAGAGGTGTTCGAAGCTGCGCGTGGATTTCACGCCCT 140
Query 121 CACTACGTGGCAGTCGCATATCGGAGCCTTTTTCTCCTGCCACCACCA--A-TGCTTCCT 177
|||||||||||||||| |||||||||||||||||||| |||||||||| | | |||
Sbjct 141 CACTACGTGGCAGTCGTATATCGGAGCCTTTTTCTCCGGCCACCACCACCACCACCACCT 200
Query 178 CCCGGTTCCAACCACCAGTTCGATCCGACGGACCTTTCTCTGGTCTAATCATCTGTGTAA 237
|||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 201 CCCGATTCCATCCACCGGTTCGTTCCGATGGACCTTTCTCTGGTCTAATCATCTGCGTAA 260
Query 238 CTGGTCTCTCTAAAGAAGCAAGGAAACAGGTTAAGGAAGCTACAGAGAGACTTGGTGGTG 297
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 261 CTGGTCTCTCTAAAGAGGCAAGGAAACAGGTCAAGGAAGCTACAGAGAGACTTGGTGGTG 320
Query 298 AATATAGTCCTCTTTTGCATTCTCTATGTACACATTT-G--GTT-----TT-TGA--G-C 345
|||| ||| | |||||||||||||||||||||||||| | ||| || ||| | |
Sbjct 321 AATACAGTGCACTTTTGCATTCTCTATGTACACATTTGGTTGTTCAGAATTATGATGGAC 380
Query 346 ---A---T--GC---C-TTGAAACATGGAAGAAGAGAGACTTTGCATATCGTTACGCTTG 393
| | || | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 381 GGAAGTTTGAGCATGCATTGAAACATGGAAGAAGAGAGACTTTGTATATCGTTACGCTTG 440
Query 394 GCTGGTTTGTGGATAGTGTCCGTAGAAATGTTAAGTTGGGTGAGTCTTTCTACGCGGTAA 453
| ||||||||||| |||||| |||||||||||||| || ||||||||||||||||||| |
Sbjct 441 GGTGGTTTGTGGACAGTGTCTGTAGAAATGTTAAGCTGAGTGAGTCTTTCTACGCGGTCA 500
Query 454 AAAAGCTTGGAGACACTAAGGTGAATGTAGATGGATCTAAA-TCGGTTTACGCGGTAGAA 512
|||| | | ||| ||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 501 AAAATCCCGAAGAGACTAAGGTGAATGAAGATGGAT-TAAAGTCGGTTTACGCGGTAGAA 559
Query 513 AAACCACCT--A-GAGGA--A-TGCAAGGAACAAAGTTCACAGGAAGCAAGGACTTGGCC 566
|||| || | | ||||| | | ||||||| | || |||||||||||||||||||||||
Sbjct 560 AAACTACATAGAGGAGGAGGAGTTCAAGGAATAGAGGTCACAGGAAGCAAGGACTTGGCC 619
Query 567 TTGTCAGGCTATTCAGTTTTTATCGATCCTGATATTTCAGAAGAAGTGAGACGCCGGGTT 626
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||
Sbjct 620 TTGTCAGGCTATTCGGTTTTTATCGATGCTGATATTTCAGAGGAAGTGAGACGCCAGGTT 679
Query 627 TCACAGGTGGCTGTTGAAGGAGGTGCCAAGCTTATGAATCAATGGTTCATTGGATGTAAT 686
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 680 TCACAGGTGGCTGTTGAAGGAGGTGCCAAGCTTATGACTCAATGGTTCATTGGATGTAAT 739
Query 687 GCAAGTCATGTTGTATGTGAAGCTGGTTCTGTCCTGAGATATCTTGGTCACTCGAGTAAT 746
|| ||||||||||||||||||| ||||||||| | ||||||||||||||||| || |||
Sbjct 740 GCTAGTCATGTTGTATGTGAAGGTGGTTCTGTTTTAAGATATCTTGGTCACTCTAGCAAT 799
Query 747 -TTGGTTACACCAGTATGGCTTCAGAAGACGTTGGAAGAGAAACCAATGCAAAATGTTGT 805
||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 800 CTTG-TTACACCACTATGGCTTCAGAAGACGTTGGAAGAGAAACCAACGCAAAATCTAGT 858
Query 806 TCGAATGTCAGCTGATTTGGCAAGAGATGTTATAACAATGCTTGAGAATCTTGTGAAGGG 865
|| |||||||| |||||||||| ||||| ||| |||||| |||||||||||| |||||
Sbjct 859 TCAAATGTCAGATGATTTGGCACGAGATCTTAGGACAATGATTGAGAATCTTGGGAAGGA 918
Query 866 ATC 868
|||
Sbjct 919 ATC 921
Score = 929 bits (503), Expect = 0.0
Identities = 610/661 (92%), Gaps = 9/661 (1%)
Strand=Plus/Plus
Query 966 ATGGGCAAGA-TGCTGATCCAGCCG---AATCAGACCAGCCTTCTAGATTCTATTTGTTG 1021
||||| |||| | |||||||||||| |||| || |||||||||||||||||| | |||
Sbjct 1007 ATGGGGAAGACT-CTGATCCAGCCGTTAAATCTGAGCAGCCTTCTAGATTCTATCTCTTG 1065
Query 1022 GACAGTATCTGAACCAACCTCAACAGCTAGTGTTATCATAGATAGTTTTAACAACAACGA 1081
|||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1066 GACAATATCTGAACCAACTTCAACAGCTAGTGTTATCATAGATAGTTTCAGCAACAACGA 1125
Query 1082 AGATATCGAAAGAAAATCTTTATCTGCCTTCTTTGATGATAAAACCAATGATTCATTCCC 1141
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
Sbjct 1126 CGATATCGAAAGAAAATCTTTATCTGCCTTCTTTGATGCTAAATCTAATGATTCATTCAC 1185
Query 1142 TCACTCCATAAGACTGCTCACAGAAAGTGAGAGAATGGAATTGGTATACAAAAACCATTT 1201
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 TCACTCCATGAGACTGCTCACAGAAAGTGAGAGAATGGAGTTGGTATACAAAAACCATTT 1245
Query 1202 TATAACATTACTACTTCCAATCGATTGGTATGGTGAGATGGGACCTTCTTCCAGGTCGTA 1261
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1246 TATAACATTACTACTTCCAATCGATTGGTATGGTGAAATGGGACCTTCTTCCAGGTCGTA 1305
Query 1262 TTTTAGTGAAACCGGCTTTACATGTCAGCAGATTCTACAACACATCTATGCATTCTATCA 1321
||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1306 TTTCAGTGAAACCGGCTTTACATGTCAGCAGATTCTCCAAAACATCTATGCATTCTATCA 1365
Query 1322 GGAAAATATGTCTGAGGAGGAAATCAAAGCAGCAATTCACACCAACTCAAGGCAGAGTGA 1381
|||||| ||||| ||||| ||| |||||||||| |||||||||||||| ||||| |||||
Sbjct 1366 GGAAAACATGTCCGAGGAAGAACTCAAAGCAGCTATTCACACCAACTCGAGGCACAGTGA 1425
Query 1382 AAAGCTCCGAGCAGTGGACTCGATGATGAAAGGCGGGAAGACTGTATTCAAACGGATTCA 1441
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1426 AAAGCTCCGAGCAGCGGACTCGGTGATGAAAGGCGGGAAGACTGTATTCAAACGTATTCA 1485
Query 1442 GTTTCTTGGATCCCG-GAAAGGCTTT-GAGATGCTTAAACGTGTTAGTAGCTTCAATTGT 1499
|||||| |||||| | |||||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 1486 GTTTCTCGGATCC-GAGAAAGG-TTTCGAGATGCTAAAACGTGTTAGTAGCTTCAACTGT 1543
Query 1500 AGTAATGTCTATGAGCTTATCATTAAGGCATAACAGTTAACAGATAAATTAGATATTCAG 1559
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1544 AGTAATGTCTATGAGCTTATCATTAAGGCATAACAATTAACATATAAATTAGAGATTCAG 1603
Query 1560 ATACAAAAATATTATTTGGGAGTTTTTGCATTTACAAGATCTGCTCGAGATCACCAAATG 1619
|||||||| ||||||||||||||| | |||||| ||||||||||||||||| || |||||
Sbjct 1604 ATACAAAACTATTATTTGGGAGTTCTCGCATTTCCAAGATCTGCTCGAGATGACTAAATG 1663
Query 1620 T 1620
|
Sbjct 1664 T 1664
Score = 76.8 bits (41), Expect = 6e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 910 ATAGAACGACAACATACAAAGAAAGGCAGAAGATTGTGGAATCCGCCAAAAAG 962
|||| |||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 930 ATAGGACGAGACCACACAAAGAAAGGCAGAAGATTGTGGAATCCGCCAAAAAG 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80973479085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5