BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484828
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43960.1 | Symbols: | Cysteine proteinases superfamily prot... 1740 0.0
> AT3G43960.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:15774055-15775657 REVERSE LENGTH=1227
Length=1227
Score = 1740 bits (942), Expect = 0.0
Identities = 1090/1163 (94%), Gaps = 4/1163 (0%)
Strand=Plus/Plus
Query 1 AAAACAAAACCAGAAGGAGAAATGGCAATAAGTTTTAGAACTCTAGCTCTTTTGACCCTC 60
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 AAAAAAAAAACAGAAGGAGAAATGGCAATAAGTTTTAGAACTCTAGCTCTTTTGACCCTC 68
Query 61 TCGGTGTTACTAATTTCCTTGTCTCTCGGCGTCGTCACGGCAACAGAGTCGCATCGGAAT 120
|||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||
Sbjct 69 TCGGTGTTACTAATTTCCATATCTCTCGGCGTCGTCACAGCAACAGAGTCGCAGAGGAAT 128
Query 121 GAAGCGGAGGTGCGTACGATTTACGAGCGATGGCTTGTAGAGCATGGGAAGAACTATAAC 180
|||| |||||||| ||| || ||||||| ||||||||||||| |||||||||||||||||
Sbjct 129 GAAGGGGAGGTGCTTACAATGTACGAGCAATGGCTTGTAGAGAATGGGAAGAACTATAAC 188
Query 181 GGTCTTGGAGAGAAGGAGAGACGGTTCAAGATCTTCAAAGACAACTTGAAACACATCGAA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 189 GGTCTTGGAGAGAAGGAGAGACGGTTCAAGATCTTCAAAGACAACTTGAAGCGCATCGAA 248
Query 241 GAACACAATTCGGATCCCAACCGGAGTTACGACCGCGGGTTGAACCAGTTTTCGGATCTG 300
||||||||||| ||||| ||||||||||| || |||||||||||| |||||||||||||
Sbjct 249 GAACACAATTCAGATCCAAACCGGAGTTATGAACGCGGGTTGAACAAGTTTTCGGATCTA 308
Query 301 ACGG-TCGATGAGTTTCAAGCTAGTTACTTGGGTGGGAAGATAGAAAAGAAAAGCCTATT 359
|||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 309 ACGGCT-GATGAGTTTCAAGCTAGTTACTTAGGTGGGAAGATGGAAAAGAAAAGCCTATC 367
Query 360 AGATGTAGCGGAGAGGTATCAGTACAAAGAAGGAGATATTTTGCCTGATGAAGTAGATTG 419
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 368 AGATGTAGCGGAGAGGTATCAGTACAAAGAAGGAGATGTTTTACCTGATGAAGTTGATTG 427
Query 420 GAGGGAGAGAGGAGCAGTTGTTCCAAGAGTCAAAAGACAAGGAGATTGTGGAAGTTGTTG 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 428 GAGGGAGAGAGGAGCAGTTGTTCCAAGAGTCAAAAGACAAGGAGAGTGTGGAAGTTGTTG 487
Query 480 GGCGTTTGCGGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACTGGAGAGTTATT 539
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 488 GGCGTTTGCCGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATTAGT 547
Query 540 ATCTTTATCGGAACAAGAACTCATTGACTGCGATAGAGGGAAAGACAACTTTGGATGTGC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 548 ATCTTTATCGGAACAAGAACTCATTGACTGCGATAGAGGGAACGACAACTTTGGATGTGC 607
Query 600 TGGAGGTGGAGCAGTGTGGGCCTTTGAGTTCATTAAAGAAAACGGTGGTATAGTAACCGA 659
||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct 608 TGGTGGTGGAGCAGTATGGGCCTTTGAGTTCATTAAGGAGAACGGTGGTATTGTATCCGA 667
Query 660 TGAAGATTACGGTTATACTGGCGATGATACTGCCGCGTGCAAGGCCATTGAGATGAAAAC 719
||||| ||| |||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 668 TGAAGTTTATGGTTATACCGGTGAAGATACTGCCGCATGCAAGGCCATTGAGATGAAAAC 727
Query 720 CACTCGGGTTGTTACCATTAATGGTCATGAAGTTGTTCCTGTAAATGATGAGATGTCTTT 779
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 728 CACTCGGGTTGTTACCATTAATGGTCATGAGGTTGTTCCTGTAAACGATGAGATGTCTTT 787
Query 780 GAAGAAAGCTGTTTCTTATCAACCTATTAGTGTTATGATATCAGCTGCAAACATGAGCGA 839
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GAAGAAAGCTGTTGCTTATCAACCTATTAGTGTTATGATATCAGCTGCAAACATGAGCGA 847
Query 840 CTACAAATCTGGTGTATATAAAGGACCATGTAGTAATTTGTGGGGAGACCATAATGTGCT 899
||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 848 CTACAAATCTGGTGTGTATAAAGGAGCATGTAGTAATTTGTGGGGAGATCACAATGTGCT 907
Query 900 AATTGTGGGATATGGAACATCATCAGATGAAGGAGACTACTGGCTTATTCGTAATTCTTG 959
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AATTGTGGGGTATGGAACATCATCAGATGAAGGAGACTACTGGCTTATTCGTAATTCTTG 967
Query 960 GGGACCAGGGTGGGGAGAAGGCGGATACCTTAGGCTCCAACGTAACTTCAATGAACCAAC 1019
|||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 968 GGGACCAGAGTGGGGAGAAGGCGGGTACCTTAGGCTTCAACGTAACTTCCATGAACCAAC 1027
Query 1020 CGGGAAATGTGCAGTCGCAGTAGCACCTGTATACCCAATCAAGACGAACTCGGCATC-CA 1078
|||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||| ||
Sbjct 1028 CGGGAAATGTGCAGTCGCTGTAGCTCCTGTATACCCAATCAAGTCGAACTCTTCATCTCA 1087
Query 1079 ATTTATTGTCACCAAGTGTGTTTAAATTGGTCCTTTTATGTATTTTTCAGTTGATTAGTT 1138
||| ||||| |||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 1088 -TTTGTTGTCTCCAAGTGTGTTTAAATTGGTTGTTTTATTTGTTTTTCAGTTGATTAGTT 1146
Query 1139 TGGCCTTGCTTTGATATATACTT 1161
|||||||||||||| ||||||||
Sbjct 1147 TGGCCTTGCTTTGAAATATACTT 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5