BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484834
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48650.1 | Symbols: | pseudogene, At14a-related protein, si... 2146 0.0
> AT3G48650.1 | Symbols: | pseudogene, At14a-related protein,
similar to At14a (GI:11994571 and GI:11994573) (Arabidopsis
thaliana) | chr3:18024663-18026149 FORWARD LENGTH=1487
Length=1487
Score = 2146 bits (1162), Expect = 0.0
Identities = 1392/1494 (93%), Gaps = 51/1494 (3%)
Strand=Plus/Plus
Query 1 ACAACATTCTCCTGTCTTGAGCAAGATTCGTAACCAAGTTCAAGTAATATCTCTTTCTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ACAACATTCTCCTGTCTTGAGCAAGATTCGTAACCAAGTTCAAGTAATTTCTCTTTCTTC 60
Query 61 AACCTCATCTCATCTTGATATTTG-T-TA---------TA--TAAGTATT-ACAAGGTTA 106
||| ||||||||| |||||||||| | || || |||||||| |||||||||
Sbjct 61 AACGTCATCTCATTTTGATATTTGTTATATCTTCCTTGTATTTAAGTATTCACAAGGTTA 120
Query 107 TATTCACGGAATTAAATTAGTCTTAACAAATGGACCCTTGTTAAGCTGCTAATTTCCAGT 166
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TATTCACGGAATTGAATTAGTCTTAACAAATGGACCCTTGTTAAGCTGCTAATTTTCAGT 180
Query 167 GATATTTACTTAAACTTGGTGTATGCAAAATATTCTGAAATCTTTGCCTTTAATTTTCTT 226
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GATATTTACTTACACTTGGTGTATGCAAAATATTCTGAAATCTTTGTCTTTAATTTTCTT 240
Query 227 CCTTTCCAGGCTAGCTCCAGTATAATATCAATGGCGGCGTTGGTTGGAA-TTATCTCTGA 285
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct 241 CCTTTCCAGGCTAGCTCCAGCATAATATCAATGGCGGCGTTGGTT-GAATTTATCTCTGA 299
Query 286 TCGTGTCCTGAGTTCTTGCGAATCTGCTTGCGAAGAAGATCCAAAGCTCAGATCCTATAT 345
||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 300 TCGTGTCCTGAGTTCTTGCAAATCCGCTTGCAAAGAAGATCCAAAGCTCAGATCCTATAT 359
Query 346 TTCTGTGCTTCACGAACGAATGAACAAATTGATGG-----AAACGGTCACCGGTCGAGGA 400
||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 360 TTCTGCGCTTCGCGAACGAATGGACAAATTGATGGAAATTAAACGGTCACCGGTCGAGGA 419
Query 401 GGCAAGACTGGAAAACCATCCAAGGAGGACTCAATCATTAAGATCAGCGA-TTTTCTAGC 459
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 420 AGCAAGACTGGAAAACCATCCAAGGAGGACTCAATCATTAAGATCATCGACTTTT-TAGC 478
Query 460 TGTCTCAAGCCAAGATGTGGTCAAGATCATTAAAGAAAGCAAATATGATTTCTCGAAGAA 519
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 TGTCTCAAGCCAAGATGTGGTCAAGATCATTAAAGAAAGCAATTATGATTTCTCGAAGAA 538
Query 520 CAAAGA-AGTAAAGTCTGTGGTTGATCTCTATTTTGAGATCGTACCAACAAGACTTTGAA 578
|||||| | ||||||||||| |||||||||||||||||| |||||||||| ||||||||
Sbjct 539 CAAAGACA-TAAAGTCTGTGATTGATCTCTATTTTGAGA--GTACCAACAATACTTTGAA 595
Query 579 TTTATTCAATACCGTCGAGAAATACGTCGCGAAAGCAAAAACCACCACGTTCAACATTCG 638
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 596 TTTAGTCAATACCGTCGAGAAATACGTAGCGAAAGCAAAAACCACCACGTTCAACATTTG 655
Query 639 ACTTGCGATCCGACAGTTTGAAAGAGAGTCGAGGGACACGGATTTTGGAGGAAACAATAA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACTTGCGATCCGACAGTTTGAAAGAGAGTCGAGGGACACGGATTTTGGAGGAAACAATAA 715
Query 699 GTACGCGGGAACGTTAGAGAAGCTGAATAAGGTTAAAGCTATGGGAGATCCTTTTGGTGA 758
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 716 GTACGCGGGAACGTTAGAGAAGCTGAATAAGGTTAAAGCTCTGGGAGATCTTTTTGGTGA 775
Query 759 CGAGTTCACGACTCAGTACAAGGCTATCTTCGACGAGCATCTTATGCTTTTAAACAAGTC 818
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 776 CGAGTTCACGACTCAGTACAAGGCTATCTACGACGAGCATCAGATGCTTTTAAACAAGTC 835
Query 819 CCGTGACATGCAACTAGAGCTTGAGAAGAAGCATAAGAATGACAAGAAATCCA-G-GA-- 874
|| | ||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 836 CCATCACATGCAACTAGAGCATGAGAAGAAGCATAAGAATGACAAGAAATCCAAGAGATT 895
Query 875 G----AT-T------CGCGGCTGCACTTTTCTCTGTTCTCGCCATATGGATTTATCTTGG 923
| || | ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 896 GGGGTATATTTTTTTCGCGGCTGCACTTTTATCTGTTCTCGCCTTATGGATTTATCTTGG 955
Query 924 AGCAGTCTCACTTGTGGTAGCAGCTAAGGTTGTGATTGGAGTGGCAACACCGAGTATTAG 983
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 956 AGCAGTCTCACTTGTGGTAGCAGCTAAGGTTGTGATTGAAGTGGCAACACCGAGTATT-G 1014
Query 984 -ACCTTTATGGAAATGGGTCACTGAGATGCTCGAGGACTCTGAG----A--TTGCTTACA 1036
||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1015 CACCTTTATGGAAATGGGTCACTGAGATCCTCGAGGACTCTGAGTCTGAGATTGCTTACA 1074
Query 1037 AGAAACTTACTGGTTTGTTTCAATCGATGGATAGAAATGCAAAACTCAACATCGAATCGG 1096
|||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||| |
Sbjct 1075 AGAAACTTACTGATTTGTTTCGATCGATGGATAAAAATGCAAACCTCAACATCGAATTTG 1134
Query 1097 CAAAGACGATAAAGAGCCTAGTTGAGACGTTAATAACAAGGATCAAGCCGATCTTGGAGA 1156
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1135 CAAAGACTTTTAAGAGCCTAGTTGAGACGTTATTAACAAGGATCAAGCCGATCTTGGAGA 1194
Query 1157 CTGTAGATGATGCTGTGGAGCAAAGAGAAGAGGAGACCGTGAAACTTGTGATGCAAGAAA 1216
|||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1195 CTGTAGATTATGCTGTGGAGCAAAGAGAAGAGGAGACCGTGAAACTTGTTA-GCAAGAAA 1253
Query 1217 TCATTAAGGATGTTGAAGGTTTTGCTGACAAAATCGAGGAAGTTGGTACAACTGTGGCTA 1276
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 TCATTAAGGATATTGAAGGTTTTGCTGACAAAATCGAGGAAGTTGGTACAAATGTGGCTA 1313
Query 1277 GGTGTAGCAAAGTGGTCGCTGAGGGAAGAGTTGATGTTCTGGAACACATAAGCAATTTAG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GGTGTAGCAAAGTGGTCGCTGAGGGAAGAGTTGATGTTCTGGAACACATAAGCAATTTAG 1373
Query 1337 CTTAATTGAAAGGAAAGTGGTAACTATCAATGTACTATGTGGTAATACTTTTATATTCAT 1396
|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CTTACTTGAAAGGAGAGTGGTGACTATCAATGTACTATGTGGTAATACTTTTATATTCAT 1433
Query 1397 GTTTGTTGTGTGCAAGACCCATATTTTGAATGTTTGAATAATGAGTTACTTTGT 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GTTTGTTGTGTGCAAGACCCATATTTTGAATGTTTGAATAATGAGTTACTTTGT 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5