BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484837
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44160.1 | Symbols: | Outer membrane OMP85 family protein |... 2355 0.0
AT3G48620.1 | Symbols: | Outer membrane OMP85 family protein |... 669 0.0
> AT3G44160.1 | Symbols: | Outer membrane OMP85 family protein
| chr3:15888902-15891988 REVERSE LENGTH=1586
Length=1586
Score = 2355 bits (1275), Expect = 0.0
Identities = 1477/1569 (94%), Gaps = 36/1569 (2%)
Strand=Plus/Plus
Query 1 AAAAATATCCAAAGCATCAAATCCTTAACCTCTCTGC-AA---ATTCACTCC------CG 50
||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 1 AAAAATATCCAAAGCATCAAATCCTTAACCTCTCTGCTAATTCATTCACTCCTGAAGAAG 60
Query 51 AAG-AAG-A-AACT-a--aaa-aaaaaCTCCTCCTTTTTCTGGGCATTGCTTGTCTAATG 103
||| ||| | || | | ||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 61 AAGAAAGAAGAAATAAGTAAATAAAAATTCCTCCTTTTTCTGGTCATTGCTTGTCTAATG 120
Query 104 CCAATTCCTGTATTGGGTTTTCTTCATGGTTGATTCTTCTCTTATTCCATCGCCATGGGA 163
||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CCAATTCCTAAATTGGGTTCTCTTCATGGTTGATTCTTCTCTCATTCCATCGCCATGGGA 180
Query 164 GCTCAGAAGAGTATCCACGCTGGTAGAGCCAAGATTGATGTTAATGTGGATTTCACTCAC 223
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GCTCAGAAGAGTATCCACGCTGGTAGAGCCAAGATTGATGTTAATGTGGACTTCACTCAC 240
Query 224 AAGCTTTGTACTTCTTTAATGTTTCCTGCTTTCAGGGACACTAGCAGTCCTCTTTCTCTA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGCTTTGTACTTCTTTAATGTTTCCTGCTTTCAGGGACACTAGCAGTCCTCTTTCTCTA 300
Query 284 GTGATTGGCAGGCAAGTTTTCCTCTGTATCAAACATCCAAATTTGTTTGGAGGAAGCGAG 343
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGATT----GGC-AG----CCTCTGTATCAAACATCCAAATTTGTTTGGAGGAAGCGAG 351
Query 344 AAGCTTGATGTTTCATGGGATAAAGGGTTGTATGATTCCAATGTACTGGTGGCTTTTAGG 403
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 352 AAGCTTGATGTATCATGGGATAAAGGATTGTATGATTCCAATGTACTTGTGGCTTTTAGG 411
Query 404 AGACCTAGACCTGAATGGCGTCCGCAACAGTGCTTCTTCATACAGCATTCTCTTTCGCCC 463
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 412 AGACCTAGACCTGAATGGCGTCCACAACAGTGTTTCTTCATACAGCATTCTCTCTCACCC 471
Query 464 GAGATAGGGGTCCATGGCACCCCAGTTGACAACTTTTCTCGGTCAGGAAGTGGAGGTGTA 523
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 472 GAGATAGGGGTCCACGGCACCCCAGTCGACAACTTTTCTCGGTCAGGAAGTGGAGGTGTA 531
Query 524 AATCTTTCTAAATTGGCTGTTGGTTTAGACTTGAGTGAGCCAGCGAGTTCAAAATGGAGC 583
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AATCTGTCTAAATTGGCTCTTGGTTTAGACTTGAGTGAGCCAGCGAGTTCAAAATGGAGC 591
Query 584 AGCACAACCAGCGTAAAGTTTGAGCATGTGCGCCCAATTAACGATGACGGACGCGCGATA 643
|||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 592 AGCACAACCAGCATAAAGTTTGAGCATGTGCGTCCGATTAACGATGATGGACGCGCGATA 651
Query 644 ACCAGAGATCTGGACGGATTTCCTATAACATGCAGTGGAAATACCCATGACAGTATGGTA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ACCAGAGATCTGGACGGATTTCCTATAACATGCAGTGGAAATACCCATGACAGTATGGTA 711
Query 704 GTTTTAAAGCAAGAATCCCGATTTGCAAAGGCTACCGACCAAGGTCTTTCTCATTTTAGC 763
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 712 GTTTTAAAGCAAGAATCCCGGTTTGCAAAGGCTACCGACCAAGGTCTTTCTCATTTTAGC 771
Query 764 ATGCAAATAGAGCAAGGTATTCCGGTTGTGTCCAAGTGGCTTATCTTCAACCGTTTCAAA 823
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATGCAAATAGAACAAGGTATTCCGGTTGTGTCCAAGTGGCTTATCTTCAACCGTTTCAAA 831
Query 824 TTTGTTGCATCAAAAGGTGTCAGGTTTGGACCGGCTTTTCTCTTAGCAAGCTTGACAGGT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTTGTTGCATCAAAAGGTGTCAGGTTTGGACCGGCTTTTCTCTTAGCAAGCTTGACAGGT 891
Query 884 GGTTCAATTGTAGGAGACATGGCACCTTATCAAGCATTTGCCATTGGTGGGCTAGGCAGT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GGTTCAATTGTAGGAGACATGGCACCTTATCAAGCATTTGCCATTGGTGGGCTAGGCAGT 951
Query 944 GTTCGGGGATATGGTGAGGGTGCTGTTGGATCCGGGCGGTCATGCCTTGTTGCTAATACA 1003
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 952 GTTCGCGGATATGGTGAGGGTGCTGTTGGATCCGGTCGGTCATGCCTTGTTGCCAATACA 1011
Query 1004 GAATTGGCGGTACCTTTGAACAAGATGACAGAAGGGACCATCTTCTTGGATTGTGGAACA 1063
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GAATTGGCGTTACCTTTGAACAAGATGACAGAAGGGACCATCTTCTTGGATTGTGGAACA 1071
Query 1064 GACCTAGGCTCAAGCCGCCTTGTCCCTGGAAACCCTTCGCTGAGACAAGGGAAGCCAGGG 1123
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1072 GACCTAGGCTCAAGCCGCCTTGTCCCCGGAAACCCTTCAATGAGACAAGGGAAGCCAGGG 1131
Query 1124 TATGGGTACGGATTTGGGTATGGACTACGGTTCAAGTCTCCATTGGGACACCTTCAGGTT 1183
| |||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1132 TTTGGGTATGGATTCGGATATGGGCTACGGTTCAAGTCTCCATTGGGTCACCTTCAGGTT 1191
Query 1184 GACTATGCCATGAATGCTTTCAACCAGAAGACTCTTTACTTCGGTGTCACCAATCTTGCT 1243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GACTATGCCATAAATGCTTTCAACCAGAAGACTCTTTACTTCGGTGTCACCAATCTTGCT 1251
Query 1244 TCATCAACATAGTCAAATAGAATAAAGCAATCAAGAAAAGCACATATTTAAAAGTCTTGA 1303
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1252 TCATCAACATAGTCAAATAGAATAAAGCAATCAAGAAAAGCACATATTCAAT-GTCTTGA 1310
Query 1304 TTCATGGATACATTTGTCTTTGCGTTGGAACCAGAAACGCCACAAGATGAGGCAAACACT 1363
|||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TTCAAAGATATATTTGTGTTTGCGTTGGAACCAGAAACGCCACAAGATGAGGCAAACACA 1370
Query 1364 GGCCAAGGAGAAGCTGT-TATTGACAAAGATCTTGAGAAGAGAAATGAAGTGTTGTCACT 1422
| ||||||||||||||| ||| |||| |||||||||||||| ||||| |||||||||| |
Sbjct 1371 GTCCAAGGAGAAGCTGTATAT-GACAGAGATCTTGAGAAGATAAATGTAGTGTTGTCATT 1429
Query 1423 AGAAATCAGACATGTAATATTACA-GGACTATAACTTTTCATTGTTTTGGTATATACAGC 1481
|||||||| |||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1430 AGAAATCA----TGTAATATTACACGGG-TATAAGTTTTCATTGTTTTGGTATATACAGC 1484
Query 1482 TGCCAGAGTTTTGTCTGAAA-GCTGCAGGTTTCATAGAGAAGAGAACACACATTTGATTC 1540
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TACCAGAGTTTTGTCTGAAAAGCTGCAGGTTTCATAGAGAAGAGAACACACATTTGATTT 1544
Query 1541 GATGGTGTT 1549
|||||||||
Sbjct 1545 GATGGTGTT 1553
> AT3G48620.1 | Symbols: | Outer membrane OMP85 family protein
| chr3:18015983-18017810 FORWARD LENGTH=1116
Length=1116
Score = 669 bits (362), Expect = 0.0
Identities = 458/499 (92%), Gaps = 27/499 (5%)
Strand=Plus/Plus
Query 608 CATGTGCGCCCAATTAACGATGACGGACGCGCGATAACCAGAGATCTGGACGGATTTCC- 666
|||||||| || ||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 315 CATGTGCGTCCGATTAACGATGACGGACGGGCGAT-ATCAGAGATCTGGACGGATTTCCT 373
Query 667 -T---AT----AA-------C-ATGCAGTGGAAATACCCATGACAGTATGGTAGTTTTAA 710
| || || | ||||||||||||||||||||||||||||||||||||||
Sbjct 374 ATAACATGCAGAATTCTCTGCTATGCAGTGGAAATACCCATGACAGTATGGTAGTTTTAA 433
Query 711 AGCAAGAATCCCGATTTGCAAAGGCTACCGACCAAGGTCTTTCTCATTTTAGCATGCAAA 770
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 434 AGCAAGAATCCCGGTTTGCAAAGGCTACTGACCAAGGTCTTTCTCATTTTAGTATGCAAA 493
Query 771 TAGAGCAAGGTATTCCGGTTGTGTCCAAGTGGCTTATCTTCAACCGTTTCAAATTTGTTG 830
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 494 TAGAACAAGGTATTCCGGTTGTGTCCAACTGGCTTATCTTCAACCGTTTCAAATTTGTTG 553
Query 831 CATCAAAAGGTGTCAGGTTTGGACCGGCTTTTCTCTTAGCAAGCTTGACAGGTGGTTCAA 890
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 554 CATCAAAAGGTGTCAGGTTTGGACCGGCTTTTCCCTTAGCAAGCTTGACAGGTGGTTCAA 613
Query 891 TTGTAGGAGACATGGCACCTTATCAAGCATTTGCCATTGGTGGGCTAGGCAGTGTTCGGG 950
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTGTAGGAGACATGACACCTTATCAAGCATTTGCCATTGGTGGGCTAGGCAGTGTTCGGG 673
Query 951 GATATGGTGAGGGTGCTGTTGGATCCGGGCGGTCATGCCTTGTTGCTAATACAGAATTGG 1010
|||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 674 GATATGGTGAGGTTGCTGTTGGATCTGGGCGGTCATGCCTTGTTGCTAATACGGAATTGG 733
Query 1011 CGGTACCTTTGAACAAGATGACAGAAGGGACCATCTTCTTGGATTGTGGAACAGACCTAG 1070
|| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CG--A------A-CAAGATGACAGAAGGGACCATCTTCTTGGATTGTGGAACAGACCTAG 784
Query 1071 GCTCAAGCCGCCTTGTCCC 1089
|||||||||||||||||||
Sbjct 785 GCTCAAGCCGCCTTGTCCC 803
Score = 333 bits (180), Expect = 3e-90
Identities = 210/224 (94%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 1091 GGAAACCCTTCGCTGAGACAAGGGAAGCCAGGGTATGGGTACGGATTTGGGTATGGACTA 1150
||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||| |||
Sbjct 892 GGAAACCCTTCGCTGAGACAAGGGAAGCCGGGGTTTGGGTATGGATTCGGGTATGGGCTA 951
Query 1151 CGGTTCAAGTCTCCATTGGGACACCTTCAGGTTGACTATGCCATGAATGCTTTCAACCAG 1210
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 952 CGGTTCAAGTCTCCATTGGGTCACCTTCAGGTTGACTATGCCATGAATGCTTTCAACCAA 1011
Query 1211 AAGACTCTTTACTTCGGTGTCACCAATCTTGCTTCATCAACATAGTCAAATAGAATAAAG 1270
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AAGACTCTTTACTTCGGTATCACCAATCTTGCTTCATCAACATAGTCAAATAGAATAAAG 1071
Query 1271 CAATCAAGAAAAGCACATATTTAA-AAGTCTTGATTCATGGATA 1313
||||||||||||||||||||| | || ||||||||| |||||
Sbjct 1072 CAATCAAGAAAAGCACATATTCAGTAA--CTTGATTCAAGGATA 1113
Score = 302 bits (163), Expect = 9e-81
Identities = 180/187 (96%), Gaps = 5/187 (3%)
Strand=Plus/Plus
Query 262 CACTAGCAGTCCTCTTTCTCTAGTGATTGGCAGGCAAGTTTTCCTCTGTATCAAACATCC 321
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 7 CACTAGCAGTCCTCTTTCTTTAGTGATTGGCAGGCAA-----CCTCTGTATCAAACATCC 61
Query 322 AAATTTGTTTGGAGGAAGCGAGAAGCTTGATGTTTCATGGGATAAAGGGTTGTATGATTC 381
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAATTTGTTTCGAGGAAGCGAGAAGCTTGATGTTTCATGGGATAAAGGGTTGTATGATTC 121
Query 382 CAATGTACTGGTGGCTTTTAGGAGACCTAGACCTGAATGGCGTCCGCAACAGTGCTTCTT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CAATGTACTGGTGGCTTTTAGGAGACCTAGACCTGAATGGCGTCCGCAACAGTGCTTCTT 181
Query 442 CATACAG 448
|||||||
Sbjct 182 CATACAG 188
Score = 178 bits (96), Expect = 2e-43
Identities = 96/96 (100%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 512 AGTGGAGGTGTAAATCTTTCTAAATTGGCTGTTGGTTTAGACTTGAGTGAGCCAGCGAGT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGTGGAGGTGTAAATCTTTCTAAATTGGCTGTTGGTTTAGACTTGAGTGAGCCAGCGAGT 246
Query 572 TCAAAATGGAGCAGCACAACCAGCGTAAAGTTTGAG 607
||||||||||||||||||||||||||||||||||||
Sbjct 247 TCAAAATGGAGCAGCACAACCAGCGTAAAGTTTGAG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76455430035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5